Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.2e-253 879.4 475 100.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.3e-218 763.1 484 89.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 6.3e-197 691.0 480 82.9
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.8e-196 689.5 489 80.4
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.4e-185 653.3 488 77.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.4e-177 626.7 492 76.4
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.5e-177 625.9 487 72.9
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-172 610.5 485 72.4
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-164 583.9 478 73.4
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-164 583.9 478 73.4
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.1e-164 583.9 478 73.4
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 5.3e-164 581.6 481 71.3
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 5.3e-164 581.6 481 71.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.7e-162 576.6 485 72.0
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 2.5e-161 572.8 485 72.2
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.4e-156 556.2 484 63.2
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-152 542.3 403 74.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 4.7e-152 542.0 420 74.3
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 4.7e-152 542.0 420 74.3
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 4.7e-152 542.0 420 74.3
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 8.3e-149 531.2 492 63.4
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.3e-146 523.9 402 71.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 9.2e-140 501.1 486 64.6
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.6e-139 500.4 403 71.5
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.7e-130 470.3 415 68.0
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-128 463.8 364 72.0
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.0e-114 416.4 484 53.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 5.1e-114 415.6 508 51.6
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 5.6e-113 412.1 490 52.7
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 7.3e-113 411.8 503 52.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 6.2e-112 408.7 514 51.6
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.2e-110 404.4 510 52.4
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.2e-109 400.2 520 51.5
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.2e-109 400.2 519 51.6
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.2e-109 400.2 500 50.2
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.9e-105 387.1 551 46.3
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.1e-103 379.8 526 47.9
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 6.9e-103 378.6 547 45.5
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.2e-102 377.9 509 47.9
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.3e-101 374.4 519 47.6
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.8e-101 372.9 538 46.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.4e-100 370.9 534 46.6
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 3.2e-100 369.8 543 46.8
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 3.2e-100 369.8 520 45.8
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 3.2e-100 369.8 534 46.8
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.4e-100 369.0 528 47.3
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.3e-100 368.2 542 47.2
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 9.3e-100 368.2 532 47.6
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.2e-99 367.9 517 45.6
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.1e-99 367.1 503 48.7
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.7e-99 366.7 519 46.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.7e-99 366.7 501 48.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.6e-99 365.9 475 49.5
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.6e-99 365.9 500 48.4
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.0e-98 364.8 527 48.2
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.3e-98 363.6 481 48.0
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.5e-97 360.9 537 45.4
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.4e-97 358.6 482 47.5
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 7.4e-97 358.6 547 45.7
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 9.6e-97 358.2 532 44.9
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 6.2e-96 355.5 539 41.9
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.4e-95 354.4 477 45.3
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.0e-94 350.5 470 47.4
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 9.9e-94 348.2 482 45.2
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.9e-93 345.9 504 47.6
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 6.4e-93 345.5 487 45.4
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 6.4e-93 345.5 494 44.9
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 6.4e-93 345.5 547 42.2
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 7.1e-92 342.0 537 45.8
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 7.1e-92 342.0 508 44.9
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.7e-91 340.1 481 43.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 3.5e-91 339.7 507 46.4
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 4.6e-91 339.3 494 46.2
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 6.0e-91 339.0 457 47.9
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.3e-90 337.8 477 45.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.1e-89 334.7 474 45.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.3e-89 333.2 370 51.9
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 7.4e-89 332.0 509 46.4
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 7.4e-89 332.0 482 44.6
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.6e-88 330.9 488 43.2
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 2.1e-88 330.5 482 45.6
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.8e-88 330.1 510 46.1
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 3.7e-88 329.7 518 42.9
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 8.2e-88 328.6 491 47.5
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 3.1e-87 326.6 444 48.0
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 9.0e-87 325.1 455 47.0
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.0e-86 323.9 437 46.9
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 4.5e-86 322.8 464 47.0
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 4.5e-86 322.8 480 44.4
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 7.6e-86 322.0 555 41.1
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.7e-85 320.9 497 42.9
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.2e-85 320.5 465 44.7
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 2.2e-85 320.5 466 44.8
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.9e-85 320.1 466 44.8
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 3.8e-85 319.7 513 41.5
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 6.5e-85 318.9 411 49.1
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 7.1e-84 315.5 363 50.1
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.0e-83 312.4 393 47.6
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 6.0e-83 312.4 479 42.8
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.9e-82 309.7 361 50.7
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.1e-82 309.3 392 50.0
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 4.3e-81 306.2 458 44.5
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 9.7e-81 305.1 536 40.9
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.3e-80 304.7 431 45.9
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.4e-79 301.2 397 45.6
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.8e-79 300.8 542 37.1
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 4.1e-79 299.7 478 41.6
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.1e-79 299.7 360 50.0
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.6e-78 297.0 449 43.7
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.0e-77 295.0 375 47.2
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.9e-77 293.5 368 49.2
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.9e-77 293.5 366 48.4
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 5.0e-77 292.7 438 43.6
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 5.0e-77 292.7 439 43.5
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 9.3e-76 288.5 377 47.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.9e-74 283.1 351 49.3
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 8.8e-74 282.0 364 47.8
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 8.8e-74 282.0 521 38.8
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.2e-72 277.3 472 43.0
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 4.8e-72 276.2 370 47.3
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.4e-71 274.6 311 51.1
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 2.0e-70 270.8 471 38.6
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.3e-69 268.1 371 46.1
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.7e-69 267.7 368 44.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.1e-68 265.0 409 42.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.4e-68 264.6 418 41.4
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 9.4e-68 261.9 339 46.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.6e-67 261.2 475 38.9
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 6.1e-67 259.2 314 49.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.7e-64 251.1 360 43.6
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.5e-60 236.1 203 66.5
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 7.2e-60 235.7 304 48.0
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 2.1e-59 234.2 339 45.1
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.7e-59 233.8 178 73.0
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.6e-57 227.3 269 52.0
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.7e-57 226.1 419 35.1
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 9.7e-57 225.3 431 37.6
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 8.2e-56 222.2 520 33.8
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 2.5e-52 210.7 304 41.8
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-49 201.8 541 31.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-49 201.8 541 31.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 2.8e-48 197.2 487 33.9
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.7e-48 196.8 219 50.7
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.1e-35 152.9 227 41.0
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.0e-34 150.6 228 41.2
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.0e-34 150.2 416 29.8
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.2e-34 149.8 224 39.7
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.5e-30 136.7 529 26.5
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.0e-29 135.6 296 31.8
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-29 134.8 344 32.0
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.1e-27 127.9 325 31.4
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.3e-26 124.4 421 24.9
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 8.9e-26 122.5 314 32.5
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-25 121.7 218 34.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 6.6e-21 106.3 169 42.6
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.6e-17 94.4 133 38.3
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 5.8e-17 93.2 153 39.9
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.8e-17 93.2 193 32.6
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 4.1e-15 87.0 154 35.1
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 6.0e-14 83.2 94 57.4
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.3e-13 82.0 89 47.2
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 6.0e-06 56.6 59 44.1


User provided reference genes

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