Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 5.6e-237 823.9 427 100.0
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 2.0e-226 788.9 427 95.6
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 2.0e-226 788.9 427 95.1
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.2e-220 767.3 427 92.3
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 8.1e-220 766.9 427 92.5
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 8.1e-220 766.9 427 92.5
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.6e-218 761.9 428 92.5
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 5.8e-218 760.8 427 91.3
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 5.8e-218 760.8 427 91.3
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 5.8e-218 760.8 427 91.3
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 7.5e-218 760.4 428 92.3
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 9.9e-218 760.0 427 91.8
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.2e-217 758.8 428 92.1
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 7.8e-215 750.4 432 89.4
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.7e-214 749.2 432 89.8
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.5e-213 745.3 431 88.4
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 4.7e-212 741.1 431 88.9
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 8.1e-212 740.3 427 89.5
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 4.9e-209 731.1 429 87.9
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.4e-208 729.6 431 87.7
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 7.1e-208 727.2 479 82.0
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.7e-207 725.3 427 87.4
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.7e-206 722.6 427 87.8
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 3.0e-206 721.8 427 86.7
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 8.7e-206 720.3 427 86.7
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 1.1e-205 719.9 427 86.7
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.5e-205 718.8 427 86.4
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 5.6e-205 717.6 429 87.2
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 6.9e-203 710.7 429 84.6
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 5.4e-200 701.0 428 86.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-181 639.8 429 76.0
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 5.6e-181 637.9 428 75.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.6e-181 637.9 429 75.5
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 9.6e-181 637.1 427 75.4
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 4.8e-180 634.8 427 75.6
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.1e-179 633.6 432 75.7
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 1.1e-179 633.6 427 75.9
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 2.4e-179 632.5 427 75.6
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.4e-179 632.5 427 75.6
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 4.0e-179 631.7 427 75.9
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 5.3e-179 631.3 428 74.8
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 6.9e-179 630.9 430 74.9
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.2e-178 630.2 424 76.4
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-178 629.8 430 74.7
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 2.0e-178 629.4 389 80.5
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.6e-178 629.0 427 75.6
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 2.2e-177 625.9 433 74.4
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 3.8e-177 625.2 428 75.2
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 3.8e-177 625.2 427 74.9
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 8.4e-177 624.0 424 75.2
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.9e-176 622.9 417 76.0
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 5.5e-176 621.3 417 76.0
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 7.1e-176 620.9 427 74.5
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 9.3e-176 620.5 427 73.8
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.2e-175 620.2 429 74.6
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.2e-175 620.2 427 74.9
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.2e-175 620.2 427 74.5
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.2e-175 620.2 427 73.8
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.6e-175 619.8 427 74.5
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.1e-175 619.4 431 72.9
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.5e-175 618.6 431 72.9
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.6e-175 618.2 430 72.8
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 4.6e-175 618.2 427 73.3
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.0e-174 617.1 432 74.8
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.8e-174 616.3 322 96.6
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.3e-174 615.9 427 74.5
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 3.0e-174 615.5 429 73.9
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 3.0e-174 615.5 427 73.3
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 8.7e-174 614.0 427 74.0
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.1e-173 613.6 427 74.7
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.5e-173 613.2 440 71.8
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 2.5e-173 612.5 427 72.8
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 2.5e-173 612.5 433 73.4
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.3e-173 612.1 427 73.8
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.3e-173 612.1 427 73.8
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.3e-173 612.1 389 77.4
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.3e-173 611.7 389 78.7
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 4.3e-173 611.7 427 73.3
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.7e-173 611.3 432 74.3
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 5.7e-173 611.3 427 73.3
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 7.4e-173 610.9 427 73.1
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 7.4e-173 610.9 428 73.4
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.3e-172 610.1 389 78.1
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.2e-172 609.4 441 71.7
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.7e-172 608.6 427 72.6
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 4.8e-172 608.2 427 73.5
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 8.2e-172 607.4 427 72.4
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 8.2e-172 607.4 429 72.5
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.1e-171 607.1 432 72.5
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.1e-171 607.1 392 76.0
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.1e-171 605.5 429 72.7
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.0e-171 604.0 406 73.9
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.5e-170 603.2 427 71.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.5e-170 603.2 427 72.1
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 5.9e-170 601.3 385 75.8
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 5.9e-170 601.3 385 75.8
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 7.7e-170 600.9 393 75.1
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.4e-168 596.7 393 75.1
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.9e-168 596.3 427 71.9
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 7.2e-168 594.3 427 71.4
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 7.2e-168 594.3 332 93.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.7e-167 592.4 427 70.7
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 4.6e-167 591.7 411 73.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 4.6e-167 591.7 410 72.2
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 7.9e-167 590.9 423 72.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.0e-166 590.5 407 74.4
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.8e-166 589.7 399 74.9
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.3e-166 589.3 438 71.0
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 5.1e-166 588.2 407 74.2
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.7e-165 584.7 437 70.7
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.3e-164 583.6 428 72.2
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.2e-164 582.8 379 75.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 3.7e-164 582.0 427 70.3
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.7e-164 582.0 413 71.9
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 4.8e-164 581.6 426 70.4
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 8.2e-164 580.9 424 71.2
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 5.3e-163 578.2 393 74.8
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 5.3e-163 578.2 425 71.3
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 6.9e-163 577.8 420 72.6
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.4e-162 575.5 384 75.8
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.5e-162 575.1 407 72.7
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 5.9e-162 574.7 354 79.9
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.7e-161 573.2 427 67.7
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 4.2e-160 568.5 413 68.5
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 8.8e-158 560.8 335 82.4
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 7.0e-155 551.2 379 74.7
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 2.0e-154 549.7 431 67.1
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.0e-153 547.4 415 69.9
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.2e-153 546.2 370 71.4
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 2.2e-153 546.2 389 69.2
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.9e-153 545.8 428 68.0
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.2e-152 542.3 439 65.8
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 9.4e-152 540.8 427 64.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.6e-151 540.0 389 70.2
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 2.2e-145 519.6 456 62.3
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.0e-143 511.1 425 61.9
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 8.8e-142 507.7 315 80.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 3.1e-139 499.2 459 61.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.3e-137 493.8 416 64.7
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.9e-137 492.7 389 65.6
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.1e-136 490.7 361 71.7
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.1e-135 486.5 424 63.0
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 4.5e-130 468.8 418 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.7e-130 468.0 405 60.2
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 6.8e-126 454.9 367 66.2
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.0e-121 441.0 231 95.7
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 6.6e-121 438.3 427 56.4
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.3e-120 436.0 366 64.8
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 4.0e-118 429.1 432 58.1
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 4.3e-112 409.1 241 83.4
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.6e-111 406.0 335 65.1
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.2e-108 396.7 271 72.7
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 3.0e-97 359.8 391 50.4
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.1e-97 359.0 410 49.5
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 9.9e-93 344.7 211 82.5
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.6e-87 327.4 390 49.0
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 4.9e-84 315.8 273 60.4
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 5.6e-80 302.4 196 74.5
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 4.8e-71 272.7 353 50.7
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 9.0e-70 268.5 151 86.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 9.0e-62 241.9 397 37.5
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 1.2e-61 241.5 302 45.0
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.6e-58 231.1 222 58.1
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.5e-53 214.5 304 42.1
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 5.9e-53 212.6 214 53.3
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.8e-47 193.7 183 58.5
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 3.1e-46 190.3 118 79.7
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 9.4e-43 178.7 428 34.6
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 8.2e-31 139.0 133 54.1
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 3.1e-30 137.1 123 63.4
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 7.7e-29 132.5 129 60.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 4.2e-27 126.7 75 81.3
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.0e-25 122.1 72 81.9
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 1.8e-22 111.3 86 74.4
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 5.4e-22 109.8 85 61.2
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.5e-20 102.4 75 66.7
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.6e-18 97.1 61 70.5
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 4.7e-18 96.7 74 70.3
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.0e-16 91.3 54 77.8
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 8.6e-12 75.9 123 39.8
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.1e-11 75.5 60 63.3
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 8.9e-09 65.9 138 35.5
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 1.3e-07 62.0 55 61.8
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 2.2e-07 61.2 35 80.0
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 7.0e-06 56.2 36 72.2


User provided reference genes

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