Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38510 Arabidopsis lyrata HOM05D000397 ORTHO05D002023 5.6e-133 477.6 243 100.0
AL5G23650 Arabidopsis lyrata HOM05D000397 ORTHO05D002023 2.8e-132 475.3 242 99.6
AL7G32260 Arabidopsis lyrata HOM05D000397 ORTHO05D002023 1.5e-125 453.0 242 94.6
AT4G21700 Arabidopsis thaliana HOM05D000397 ORTHO05D002023 1.5e-117 426.4 242 90.1
Carub.0007s1971 Capsella rubella HOM05D000397 ORTHO05D002023 3.1e-99 365.5 250 78.4
Thhalv10024323m.g Eutrema salsugineum HOM05D000397 ORTHO05D002023 2.9e-97 359.0 248 77.8
Sp7g19830 Schrenkiella parvula HOM05D000397 ORTHO05D002023 3.0e-94 349.0 248 75.4
CARHR228430 Cardamine hirsuta HOM05D000397 ORTHO05D002023 5.6e-85 318.2 248 71.8
C01p15680 Brassica napus HOM05D000397 ORTHO05D002023 3.8e-73 278.9 234 67.9
BolC1t01522H Brassica oleracea HOM05D000397 ORTHO05D002023 3.8e-73 278.9 234 67.9
BraA01t01242Z Brassica rapa HOM05D000397 ORTHO05D002023 4.2e-72 275.4 235 66.8
A01p12990 Brassica napus HOM05D000397 ORTHO05D002023 1.2e-71 273.9 235 66.4
Aa31LG6G3670 Aethionema arabicum HOM05D000397 ORTHO05D002023 1.1e-61 240.7 250 58.0
THA.LOC104806284 Tarenaya hassleriana HOM05D000397 ORTHO05D002023 9.1e-43 177.9 231 48.1
BcaC09g51215 Brassica carinata HOM05D000397 ORTHO05D002023 2.7e-26 123.2 91 72.5
Duzib235G1412 Durio zibethinus HOM05D000397 ORTHO05D002023 8.0e-23 111.7 259 36.3
Gohir.D10G026500 Gossypium hirsutum HOM05D000397 ORTHO05D002023 2.3e-22 110.2 253 36.4
Gorai.011G027800 Gossypium raimondii HOM05D000397 ORTHO05D002023 2.3e-22 110.2 253 36.4
Cfa000459 Carpinus fangiana HOM05D000397 ORTHO05D002023 2.6e-21 106.7 232 36.6
Thecc.06G187800 Theobroma cacao HOM05D000397 ORTHO05D002023 4.4e-21 105.9 254 34.3
Haze_06458 Corylus avellana HOM05D000397 ORTHO05D002023 1.3e-20 104.4 229 35.4
COL.COLO4_31473 Corchorus olitorius HOM05D000397 ORTHO05D002023 4.9e-20 102.4 254 35.0
Atru.chr10.1878 Acer truncatum HOM05D000397 ORTHO05D002023 1.2e-18 97.8 252 37.7
CiPaw.09G060200 Carya illinoinensis HOM05D000397 ORTHO05D002023 2.0e-18 97.1 221 34.8
Ciclev10014282m.g Citrus clementina HOM05D000397 ORTHO05D002023 3.9e-17 92.8 221 35.7
QL04p075050 Quercus lobata HOM05D000397 ORTHO05D002023 3.9e-17 92.8 214 36.9
QL04p075801 Quercus lobata HOM05D000397 ORTHO05D002023 5.0e-17 92.4 214 35.0
FAN11G3124 Fragaria x ananassa HOM05D000397 ORTHO05D002023 6.6e-17 92.0 221 35.3
TWI38G0318 Tripterygium wilfordii HOM05D000397 ORTHO05D002023 8.6e-17 91.7 197 34.5
Dinv04308 Davidia involucrata HOM05D000397 ORTHO05D002023 4.3e-16 89.4 240 34.2
TAR624G1261 Trochodendron aralioides HOM05D000397 ORTHO05D002023 4.3e-16 89.4 224 32.6
FvH4_3g09240 Fragaria vesca HOM05D000397 ORTHO05D002023 1.2e-15 87.8 221 34.8
QL05p040325 Quercus lobata HOM05D000397 ORTHO05D002023 1.2e-15 87.8 231 33.8
Cpa.g.sc27.22 Carica papaya HOM05D000397 ORTHO05D002023 4.7e-15 85.9 133 42.1
Dinv07559 Davidia involucrata HOM05D000397 ORTHO05D002023 4.7e-15 85.9 237 32.1
MD10G1294900 Malus domestica HOM05D000397 ORTHO05D002023 6.1e-15 85.5 258 32.2
MELO3C002604.2 Cucumis melo HOM05D000397 ORTHO05D002023 8.0e-15 85.1 194 35.1
Gohir.A10G025800 Gossypium hirsutum HOM05D000397 ORTHO05D002023 8.0e-15 85.1 183 37.2
PSO541G5412 Papaver somniferum HOM05D000397 ORTHO05D002023 8.0e-15 85.1 223 36.3
FAN21G1716 Fragaria x ananassa HOM05D000397 ORTHO05D002023 1.0e-14 84.7 219 32.9
PSO675G7294 Papaver somniferum HOM05D000397 ORTHO05D002023 2.3e-14 83.6 223 35.9
Hma1.2p1_0785F.1_g217460 Hydrangea macrophylla HOM05D000397 ORTHO05D002023 3.1e-14 83.2 251 31.1
Nn1g06534 Nelumbo nucifera HOM05D000397 ORTHO05D002023 5.2e-14 82.4 225 31.1
Prupe.4G047300 Prunus persica HOM05D000397 ORTHO05D002023 5.2e-14 82.4 219 32.0
FAN25G0062 Fragaria x ananassa HOM05D000397 ORTHO05D002023 3.4e-13 79.7 237 33.3
RcHm_v2.0_Chr5g0008381 Rosa chinensis HOM05D000397 ORTHO05D002023 4.4e-13 79.3 208 31.7
CANSAT35G0162 Cannabis sativa HOM05D000397 ORTHO05D002023 5.8e-13 79.0 254 31.5
ClCG03G006060 Citrullus lanatus HOM05D000397 ORTHO05D002023 5.8e-13 79.0 235 33.2
TWI63G1212 Tripterygium wilfordii HOM05D000397 ORTHO05D002023 9.8e-13 78.2 223 32.3
MBI07_g30172_MAGBIO Magnolia biondii HOM05D000397 ORTHO05D002023 2.2e-12 77.0 228 30.7
Hma1.2p1_0885F.1_g232630 Hydrangea macrophylla HOM05D000397 ORTHO05D002023 2.9e-12 76.6 232 32.3
Hma1.2p1_0885F.1_g232635 Hydrangea macrophylla HOM05D000397 ORTHO05D002023 2.9e-12 76.6 232 32.3
GSVIVG01014347001 Vitis vinifera HOM05D000397 ORTHO05D002023 3.7e-12 76.3 199 34.2
Rhsim04G0020600 Rhododendron simsii HOM05D000397 ORTHO05D002023 4.9e-12 75.9 226 33.2
COL.COLO4_24815 Corchorus olitorius HOM05D000397 ORTHO05D002023 8.3e-12 75.1 228 32.5
Sed0018650 Sechium edule HOM05D000397 ORTHO05D002023 8.3e-12 75.1 226 30.5
Rhsim13G0178100 Rhododendron simsii HOM05D000397 ORTHO05D002023 2.4e-11 73.6 221 29.0
Eucgr.F01124 Eucalyptus grandis HOM05D000397 ORTHO05D002023 3.2e-11 73.2 216 32.4
Potri.011G052500 Populus trichocarpa HOM05D000397 ORTHO05D002023 4.1e-11 72.8 254 29.1
CSS0009049 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 5.4e-11 72.4 227 34.4
Medtr2g079310 Medicago truncatula HOM05D000397 ORTHO05D002023 5.4e-11 72.4 234 27.4
Potri.003G087400 Populus trichocarpa HOM05D000397 ORTHO05D002023 5.4e-11 72.4 243 30.5
Manes.17G045500 Manihot esculenta HOM05D000397 ORTHO05D002023 7.0e-11 72.0 240 32.9
Psat5g242840 Pisum sativum HOM05D000397 ORTHO05D002023 7.0e-11 72.0 188 28.2
Atru.chr2.2619 Acer truncatum HOM05D000397 ORTHO05D002023 1.2e-10 71.2 232 33.6
Gohir.A04G030200 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.2e-10 71.2 222 31.1
VMungo0540G0344 Vigna mungo HOM05D000397 ORTHO05D002023 1.2e-10 71.2 224 32.1
Aqoxy1G02427 Aquilegia oxysepala HOM05D000397 ORTHO05D002023 1.6e-10 70.9 208 28.8
Manes.15G173200 Manihot esculenta HOM05D000397 ORTHO05D002023 1.6e-10 70.9 248 33.1
Gohir.D05G356600 Gossypium hirsutum HOM05D000397 ORTHO05D002023 2.0e-10 70.5 229 31.4
Gorai.N016800 Gossypium raimondii HOM05D000397 ORTHO05D002023 2.0e-10 70.5 229 31.4
Lj6g0002804 Lotus japonicus HOM05D000397 ORTHO05D002023 2.0e-10 70.5 211 32.7
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 2.7e-10 70.1 225 32.9
Ah.09g237380 Amaranthus hybridus HOM05D000397 ORTHO05D002023 2.7e-10 70.1 225 29.8
Eucgr.E03304 Eucalyptus grandis HOM05D000397 ORTHO05D002023 2.7e-10 70.1 198 30.8
Thecc.07G089000 Theobroma cacao HOM05D000397 ORTHO05D002023 2.7e-10 70.1 233 30.9
Dinv40561 Davidia involucrata HOM05D000397 ORTHO05D002023 3.5e-10 69.7 252 29.8
Migut.M00810 Erythranthe guttata HOM05D000397 ORTHO05D002023 3.5e-10 69.7 223 31.4
Atru.chr2.2620 Acer truncatum HOM05D000397 ORTHO05D002023 4.6e-10 69.3 227 31.7
Ciclev10010435m.g Citrus clementina HOM05D000397 ORTHO05D002023 6.0e-10 68.9 197 32.5
SGA_v2.0_scaffold9G04921 Striga asiatica HOM05D000397 ORTHO05D002023 6.0e-10 68.9 236 29.2
Glyma.13G277500 Glycine max HOM05D000397 ORTHO05D002023 7.8e-10 68.6 216 32.9
Gohir.D05G356300 Gossypium hirsutum HOM05D000397 ORTHO05D002023 7.8e-10 68.6 231 31.2
Gohir.D05G356866 Gossypium hirsutum HOM05D000397 ORTHO05D002023 7.8e-10 68.6 224 30.8
Phvul.005G065300 Phaseolus vulgaris HOM05D000397 ORTHO05D002023 7.8e-10 68.6 223 32.3
Rhsim04G0021000 Rhododendron simsii HOM05D000397 ORTHO05D002023 7.8e-10 68.6 222 29.3
Sabra03G0057200 Salix brachista HOM05D000397 ORTHO05D002023 7.8e-10 68.6 242 31.8
CDE10G0305 Ceratophyllum demersum HOM05D000397 ORTHO05D002023 1.0e-09 68.2 228 27.6
Ciclev10010518m.g Citrus clementina HOM05D000397 ORTHO05D002023 1.0e-09 68.2 241 33.2
Atru.chr2.2698 Acer truncatum HOM05D000397 ORTHO05D002023 1.7e-09 67.4 227 30.8
BcaC09g51216 Brassica carinata HOM05D000397 ORTHO05D002023 1.7e-09 67.4 56 64.3
Glyma.15G074100 Glycine max HOM05D000397 ORTHO05D002023 1.7e-09 67.4 225 29.3
Gohir.D05G356400 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.7e-09 67.4 234 30.8
CSS0048812 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 2.3e-09 67.0 233 33.0
CiPaw.11G169100 Carya illinoinensis HOM05D000397 ORTHO05D002023 2.3e-09 67.0 233 31.3
CSS0003130 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 3.0e-09 66.6 237 31.6
CSS0033816 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 3.0e-09 66.6 205 31.2
Rhsim04G0020700 Rhododendron simsii HOM05D000397 ORTHO05D002023 3.0e-09 66.6 195 29.7
CSS0011471 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 3.9e-09 66.2 236 31.8
Lj1C844T5 Lonicera japonica HOM05D000397 ORTHO05D002023 3.9e-09 66.2 243 30.0
TPR.G38966 Trifolium pratense HOM05D000397 ORTHO05D002023 3.9e-09 66.2 208 27.9
Rhsim04G0021200 Rhododendron simsii HOM05D000397 ORTHO05D002023 5.0e-09 65.9 154 32.5
CSS0024633 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 6.6e-09 65.5 230 32.6
Gohir.D05G356001 Gossypium hirsutum HOM05D000397 ORTHO05D002023 6.6e-09 65.5 192 31.8
Gohir.D05G356500 Gossypium hirsutum HOM05D000397 ORTHO05D002023 6.6e-09 65.5 214 31.3
Duzib268G0967 Durio zibethinus HOM05D000397 ORTHO05D002023 8.6e-09 65.1 235 28.1
Glyma.06G244800 Glycine max HOM05D000397 ORTHO05D002023 1.1e-08 64.7 218 31.7
RcHm_v2.0_Chr5g0034231 Rosa chinensis HOM05D000397 ORTHO05D002023 1.1e-08 64.7 221 27.1
MSTRG.15886 Avicennia marina HOM05D000397 ORTHO05D002023 1.5e-08 64.3 233 26.2
CSS0002760 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 1.5e-08 64.3 215 33.0
Gohir.D01G050700 Gossypium hirsutum HOM05D000397 ORTHO05D002023 1.5e-08 64.3 231 29.0
HPP92_010056 Vanilla planifolia HOM05D000397 ORTHO05D002023 1.9e-08 63.9 246 29.3
GSVIVG01014344001 Vitis vinifera HOM05D000397 ORTHO05D002023 1.9e-08 63.9 207 31.9
CsaV3_1G012310 Cucumis sativus L. HOM05D000397 ORTHO05D002023 2.5e-08 63.5 188 33.5
Gorai.009G389200 Gossypium raimondii HOM05D000397 ORTHO05D002023 2.5e-08 63.5 160 31.9
Lsat_1_v5_gn_9_96680 Lactuca sativa HOM05D000397 ORTHO05D002023 2.5e-08 63.5 219 29.2
Lj1C1205T6 Lonicera japonica HOM05D000397 ORTHO05D002023 2.5e-08 63.5 173 31.2
Rhsim04G0020500 Rhododendron simsii HOM05D000397 ORTHO05D002023 2.5e-08 63.5 164 32.3
COL.COLO4_24814 Corchorus olitorius HOM05D000397 ORTHO05D002023 3.3e-08 63.2 200 32.0
Gorai.009G388800 Gossypium raimondii HOM05D000397 ORTHO05D002023 3.3e-08 63.2 194 33.5
QL04p075662 Quercus lobata HOM05D000397 ORTHO05D002023 3.3e-08 63.2 141 35.5
RcHm_v2.0_Chr5g0034271 Rosa chinensis HOM05D000397 ORTHO05D002023 3.3e-08 63.2 227 30.0
SEGI_09900 Sequoiadendron giganteum HOM05D000397 ORTHO05D002023 3.3e-08 63.2 191 28.3
Migut.H01933 Erythranthe guttata HOM05D000397 ORTHO05D002023 4.3e-08 62.8 204 28.4
Gohir.D05G356100 Gossypium hirsutum HOM05D000397 ORTHO05D002023 4.3e-08 62.8 224 32.1
Lalb_Chr25g0286401 Lupinus albus HOM05D000397 ORTHO05D002023 4.3e-08 62.8 207 31.9
Duzib213G0908 Durio zibethinus HOM05D000397 ORTHO05D002023 5.6e-08 62.4 235 29.8
Gohir.A01G064000 Gossypium hirsutum HOM05D000397 ORTHO05D002023 5.6e-08 62.4 231 29.0
HanXRQChr13g0424261 Helianthus annuus HOM05D000397 ORTHO05D002023 7.3e-08 62.0 214 29.4
Sabra03G0057300 Salix brachista HOM05D000397 ORTHO05D002023 7.3e-08 62.0 246 28.5
SalBow7G3370 Salvia bowleyana HOM05D000397 ORTHO05D002023 7.3e-08 62.0 209 30.1
Duzib268G1410 Durio zibethinus HOM05D000397 ORTHO05D002023 9.5e-08 61.6 227 28.6
HanXRQChr09g0272681 Helianthus annuus HOM05D000397 ORTHO05D002023 9.5e-08 61.6 214 31.8
MD11G1246500 Malus domestica HOM05D000397 ORTHO05D002023 1.2e-07 61.2 233 29.6
Gorai.009G389300 Gossypium raimondii HOM05D000397 ORTHO05D002023 1.6e-07 60.8 222 29.3
TAR624G1401 Trochodendron aralioides HOM05D000397 ORTHO05D002023 1.6e-07 60.8 61 52.5
MSTRG.14360 Avicennia marina HOM05D000397 ORTHO05D002023 2.1e-07 60.5 191 29.8
Ca_01838_v3 Cicer arietinum L. HOM05D000397 ORTHO05D002023 2.1e-07 60.5 231 29.4
Gorai.002G070600 Gossypium raimondii HOM05D000397 ORTHO05D002023 2.1e-07 60.5 231 28.1
Gorai.007G322400 Gossypium raimondii HOM05D000397 ORTHO05D002023 2.1e-07 60.5 251 26.3
Gorai.009G388500 Gossypium raimondii HOM05D000397 ORTHO05D002023 2.1e-07 60.5 160 32.5
CSS0038494 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D002023 2.8e-07 60.1 222 31.5
Gohir.D05G356900 Gossypium hirsutum HOM05D000397 ORTHO05D002023 2.8e-07 60.1 222 29.3
HanXRQChr09g0272671 Helianthus annuus HOM05D000397 ORTHO05D002023 2.8e-07 60.1 220 29.5
VMungo1383G3263 Vigna mungo HOM05D000397 ORTHO05D002023 2.8e-07 60.1 219 27.4
DCAR_010209 Daucus carota HOM05D000397 ORTHO05D002023 3.6e-07 59.7 199 32.7
Thecc.07G088400 Theobroma cacao HOM05D000397 ORTHO05D002023 3.6e-07 59.7 199 29.6
ECA236G2946 Erigeron canadensis HOM05D000397 ORTHO05D002036 4.7e-07 59.3 140 32.1
Gohir.A04G029908 Gossypium hirsutum HOM05D000397 ORTHO05D002023 4.7e-07 59.3 222 29.3
TPR.G38996 Trifolium pratense HOM05D000397 ORTHO05D002023 4.7e-07 59.3 219 28.8
Atru.chr2.2699 Acer truncatum HOM05D000397 ORTHO05D002023 6.2e-07 58.9 176 33.5
Haze_09422 Corylus avellana HOM05D000397 ORTHO05D002023 6.2e-07 58.9 223 30.5
Sabra11G0036300 Salix brachista HOM05D000397 ORTHO05D002023 6.2e-07 58.9 261 29.1
SHI01735 Sapria himalayana HOM05D000397 ORTHO05D002023 8.0e-07 58.5 237 28.7
HanXRQChr09g0272691 Helianthus annuus HOM05D000397 ORTHO05D002023 1.4e-06 57.8 214 27.6
PGR083G1019 Punica granatum HOM05D000397 ORTHO05D002023 1.4e-06 57.8 257 26.8
RcHm_v2.0_Chr5g0034201 Rosa chinensis HOM05D000397 ORTHO05D002023 1.4e-06 57.8 235 27.2
Gorai.002G070400 Gossypium raimondii HOM05D000397 ORTHO05D002023 1.8e-06 57.4 234 30.3
Cc05_g12090 Coffea canephora HOM05D000397 ORTHO05D002023 2.3e-06 57.0 228 28.9
Dinv20169 Davidia involucrata HOM05D000397 ORTHO05D004937 2.3e-06 57.0 74 45.9
Migut.M01141 Erythranthe guttata HOM05D000397 ORTHO05D002023 2.3e-06 57.0 254 28.7
Lsat_1_v5_gn_7_21341 Lactuca sativa HOM05D000397 ORTHO05D002023 2.3e-06 57.0 233 29.6
MD11G1246400 Malus domestica HOM05D000397 ORTHO05D002023 2.3e-06 57.0 233 30.0
Cc02_g13380 Coffea canephora HOM05D000397 ORTHO05D002023 3.1e-06 56.6 243 26.7
RcHm_v2.0_Chr5g0033881 Rosa chinensis HOM05D000397 ORTHO05D002023 3.1e-06 56.6 218 30.3
vmacro09534 Vaccinium macrocarpon HOM05D000397 ORTHO05D002023 3.1e-06 56.6 197 30.5
Haze_05740 Corylus avellana HOM05D039524 ORTHO05D029135 4.0e-06 56.2 101 36.6
Gohir.D01G050500 Gossypium hirsutum HOM05D000397 ORTHO05D002023 4.0e-06 56.2 234 29.9
Thecc.07G088700 Theobroma cacao HOM05D000397 ORTHO05D002023 4.0e-06 56.2 229 29.7
SGA_v2.0_scaffold100G29685 Striga asiatica HOM05D000397 ORTHO05D002023 5.2e-06 55.8 230 27.8
FvH4_3g20050 Fragaria vesca HOM05D000397 ORTHO05D002023 6.8e-06 55.5 231 27.7
VMungo1080G0545 Vigna mungo HOM05D000397 ORTHO05D002023 6.8e-06 55.5 223 28.7
Atru.chr2.2636 Acer truncatum HOM05D000397 ORTHO05D002023 8.9e-06 55.1 137 32.8
Psat1g205000 Pisum sativum HOM05D000397 ORTHO05D002023 8.9e-06 55.1 227 26.9
Prupe.4G182000 Prunus persica HOM05D000397 ORTHO05D002023 8.9e-06 55.1 230 29.1


User provided reference genes

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