Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 1.6e-123 446.0 219 100.0
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 1.4e-114 416.4 221 92.3
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 4.3e-108 394.8 220 88.2
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 2.2e-104 382.5 220 84.1
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 1.1e-103 380.2 219 83.6
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 6.0e-102 374.4 221 82.8
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 6.0e-102 374.4 221 82.8
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 6.0e-102 374.4 220 85.5
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 4.7e-99 364.8 219 82.2
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 4.7e-99 364.8 219 82.2
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 1.8e-98 362.8 219 81.7
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 4.0e-98 361.7 219 80.4
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 1.1e-95 353.6 220 79.1
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 1.2e-86 323.6 221 72.4
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 4.3e-76 288.5 232 64.7
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 1.9e-71 273.1 232 59.9
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 4.6e-70 268.5 204 65.2
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 1.8e-69 266.5 232 60.3
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 3.0e-69 265.8 237 59.5
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 3.9e-69 265.4 230 63.0
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 6.7e-69 264.6 207 65.7
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 6.7e-69 264.6 207 64.3
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 8.7e-69 264.2 209 63.6
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 2.1e-67 259.6 207 63.8
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 2.8e-67 259.2 235 60.4
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 6.2e-67 258.1 209 62.7
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 6.2e-67 258.1 242 57.9
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 1.8e-66 256.5 206 65.0
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 1.8e-66 256.5 203 64.0
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 6.9e-66 254.6 234 56.8
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.0e-65 253.1 240 58.3
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 2.0e-65 253.1 212 61.3
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 3.4e-65 252.3 235 58.7
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 3.4e-65 252.3 235 57.9
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 4.5e-65 251.9 204 63.7
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 5.8e-65 251.5 232 59.9
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.0e-64 250.8 206 61.2
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 1.3e-64 250.4 210 58.6
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 1.7e-64 250.0 207 61.8
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 2.9e-64 249.2 241 54.4
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 3.8e-64 248.8 207 61.8
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 4.9e-64 248.4 249 56.2
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 4.9e-64 248.4 230 57.4
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 8.4e-64 247.7 232 58.2
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 1.1e-63 247.3 207 63.3
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 1.4e-63 246.9 245 52.7
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 1.9e-63 246.5 207 62.8
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 2.5e-63 246.1 240 54.2
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 3.2e-63 245.7 206 61.2
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 3.2e-63 245.7 237 57.4
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 4.2e-63 245.4 206 60.2
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 4.2e-63 245.4 207 61.8
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 9.3e-63 244.2 225 56.9
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 3.5e-62 242.3 202 61.9
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 3.5e-62 242.3 208 60.6
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 6.0e-62 241.5 228 56.1
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 1.0e-61 240.7 242 55.4
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.3e-61 240.4 238 55.9
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 3.0e-61 239.2 226 58.0
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 3.9e-61 238.8 203 61.1
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 3.9e-61 238.8 203 61.1
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 3.9e-61 238.8 207 58.5
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 3.9e-61 238.8 230 53.0
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 6.7e-61 238.0 210 61.9
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 8.7e-61 237.7 235 54.5
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 1.1e-60 237.3 212 57.1
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 1.5e-60 236.9 237 56.1
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.9e-60 236.5 236 54.2
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 2.5e-60 236.1 207 58.9
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 2.8e-59 232.6 230 57.0
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 3.1e-58 229.2 243 52.7
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 4.1e-58 228.8 221 57.0
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 1.5e-57 226.9 195 59.0
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 1.5e-57 226.9 243 52.7
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 2.6e-57 226.1 208 58.2
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 7.6e-57 224.6 236 50.8
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 1.0e-56 224.2 212 55.2
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 2.9e-56 222.6 241 50.6
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 2.9e-56 222.6 240 52.1
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 1.4e-55 220.3 240 50.4
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 7.2e-55 218.0 208 55.8
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.2e-54 217.2 227 53.3
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 5.1e-53 211.8 200 52.0
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 1.1e-52 210.7 200 54.0
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 1.3e-51 207.2 178 58.4
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 8.2e-51 204.5 151 64.9
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 6.9e-50 201.4 205 53.2
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 8.5e-48 194.5 131 67.9
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 1.0e-45 187.6 135 65.2
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 2.0e-44 183.3 200 48.0
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 3.7e-43 179.1 118 69.5
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 8.2e-43 177.9 138 59.4
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 1.4e-42 177.2 110 75.5
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 5.3e-42 175.3 299 40.8
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 1.0e-40 171.0 108 71.3
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.5e-39 166.4 109 70.6
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 3.2e-39 166.0 110 69.1
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 5.5e-39 165.2 139 59.0
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 4.1e-34 149.1 94 74.5
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 3.2e-31 139.4 150 50.7
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 8.0e-30 134.8 137 49.6
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 1.0e-29 134.4 87 74.7
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 2.7e-25 119.8 77 67.5
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 3.8e-24 115.9 76 65.8
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 3.2e-23 112.8 117 47.0
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 1.0e-21 107.8 185 36.8
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 2.7e-17 93.2 68 69.1
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 2.7e-17 93.2 68 69.1
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 5.9e-17 92.0 71 59.2
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 2.9e-16 89.7 175 34.3
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 2.1e-14 83.6 68 63.2
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 6.1e-14 82.0 101 49.5
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 5.2e-13 79.0 57 63.2
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 3.4e-12 76.3 64 65.6
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 3.4e-12 76.3 64 65.6
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 3.1e-10 69.7 43 65.1
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 7.0e-10 68.6 136 39.7
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 3.3e-07 59.7 104 36.5


User provided reference genes

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