Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 1.9e-187 659.1 335 100.0
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 2.5e-168 595.5 337 91.7
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 9.3e-139 497.3 340 80.9
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 6.7e-137 491.1 338 79.6
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 7.4e-136 487.6 341 80.4
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 4.8e-127 458.4 339 75.2
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 4.8e-127 458.4 339 75.2
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 2.4e-126 456.1 339 75.2
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 5.3e-126 454.9 339 74.3
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 5.3e-126 454.9 339 74.3
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 2.2e-124 449.5 340 73.8
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 2.5e-123 446.0 337 75.4
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 1.6e-122 443.4 340 73.2
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 2.1e-122 443.0 347 72.0
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 3.7e-119 432.2 338 71.9
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 1.0e-116 424.1 338 71.0
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 1.7e-116 423.3 337 70.3
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 2.9e-116 422.5 342 70.5
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 2.9e-116 422.5 342 70.5
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 9.4e-115 417.5 342 69.9
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 4.0e-113 412.1 340 69.4
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 4.1e-102 375.6 349 66.5
BcaC02g09872 Brassica carinata HOM05D009749 ORTHO05D008033 3.3e-83 312.8 267 67.8
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 1.4e-65 254.2 186 76.3
Thhalv10006450m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 2.3e-60 236.9 156 83.3
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 2.6e-56 223.4 331 46.8
Aa31LG10G11650 Aethionema arabicum HOM05D009749 ORTHO05D008033 2.6e-40 170.2 154 63.6
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 1.0e-15 88.6 271 28.0
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 7.2e-14 82.4 351 27.4
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 7.2e-14 82.4 263 28.5
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.7e-13 80.5 235 26.8
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 5.1e-12 76.3 238 29.8
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 8.8e-12 75.5 215 29.8
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 8.8e-12 75.5 94 42.6
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 1.5e-11 74.7 222 29.3
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 2.0e-11 74.3 388 24.7
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 2.0e-11 74.3 243 28.0
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 2.6e-11 73.9 384 24.5
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 2.6e-11 73.9 311 24.1
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 3.3e-11 73.6 375 28.0
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 1.3e-10 71.6 236 28.8
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 1.7e-10 71.2 246 28.0
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 2.2e-10 70.9 211 28.0
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 3.7e-10 70.1 251 27.1
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 4.8e-10 69.7 389 22.9
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 1.4e-09 68.2 399 25.8
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 1.8e-09 67.8 205 29.3
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 4.1e-09 66.6 403 24.6
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 4.1e-09 66.6 413 26.2
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 4.1e-09 66.6 246 27.6
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 4.1e-09 66.6 281 27.0
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 9.1e-09 65.5 393 23.7
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 1.2e-08 65.1 279 26.2
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.2e-08 65.1 95 36.8
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.2e-08 65.1 95 36.8
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 2.0e-08 64.3 209 29.2
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 4.5e-08 63.2 263 25.1
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 4.5e-08 63.2 245 25.3
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 5.9e-08 62.8 328 25.0
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 7.7e-08 62.4 236 25.4
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 1.3e-07 61.6 432 24.1
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 1.3e-07 61.6 98 36.7
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 1.3e-07 61.6 274 24.8
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 3.8e-07 60.1 95 36.8
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 5.0e-07 59.7 323 24.8
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 8.5e-07 58.9 196 24.0
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 1.1e-06 58.5 235 23.4
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 1.4e-06 58.2 248 27.4
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 4.2e-06 56.6 202 26.7
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 4.2e-06 56.6 243 24.7
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 5.5e-06 56.2 275 25.5
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 5.5e-06 56.2 336 24.7
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 7.2e-06 55.8 261 23.4
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 7.2e-06 55.8 259 25.1
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 9.4e-06 55.5 389 22.6


User provided reference genes

Program Settings