Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.3e-131 473.0 234 100.0
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.5e-122 442.2 234 93.2
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.2e-111 406.8 244 85.7
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.1e-109 400.2 246 85.4
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.4e-102 374.4 238 81.9
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 5.4e-101 371.3 246 80.9
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 3.9e-91 338.6 236 77.5
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 5.1e-91 338.2 236 77.5
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 1.1e-88 330.5 227 77.1
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 4.0e-88 328.6 227 77.1
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 4.0e-88 328.6 227 77.1
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 8.9e-88 327.4 223 78.5
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 8.9e-88 327.4 223 78.5
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.5e-87 326.6 228 77.2
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.5e-87 326.6 228 77.2
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 5.8e-87 324.7 220 77.3
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 8.4e-86 320.9 237 74.7
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 8.4e-86 320.9 236 75.0
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.1e-80 303.9 254 68.1
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.1e-76 289.7 250 64.8
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.0e-76 288.1 245 64.9
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.2e-73 278.1 252 63.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 2.9e-46 189.5 189 52.9
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 8.8e-43 177.9 244 44.3
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 8.8e-43 177.9 244 44.3
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.0e-42 176.8 238 43.7
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.3e-42 176.0 258 44.2
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 4.4e-42 175.6 242 47.9
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.8e-40 170.2 202 46.5
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 2.4e-40 169.9 169 56.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 2.4e-40 169.9 169 56.2
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 3.1e-40 169.5 249 43.0
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 4.1e-40 169.1 255 42.7
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 5.3e-40 168.7 209 47.8
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 5.3e-40 168.7 241 43.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.5e-39 167.2 241 41.9
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.0e-39 166.8 216 47.2
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 5.9e-39 165.2 224 46.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 5.9e-39 165.2 216 41.2
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.0e-38 164.5 198 49.0
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.0e-38 164.5 198 49.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.0e-38 164.5 175 51.4
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.3e-38 164.1 247 43.7
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.3e-38 164.1 247 43.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.3e-38 164.1 243 42.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.2e-38 163.3 154 52.6
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.9e-38 162.9 215 47.0
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.9e-38 162.9 211 46.9
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.0e-38 162.2 179 50.3
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.0e-38 162.2 224 44.2
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 6.5e-38 161.8 204 47.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.5e-38 161.4 224 43.8
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.4e-37 160.6 239 43.9
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.4e-37 160.6 251 41.0
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.4e-37 160.6 187 49.2
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.5e-37 159.8 155 51.6
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.2e-37 159.5 172 51.2
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.2e-37 159.1 224 43.8
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 7.2e-37 158.3 157 52.9
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 7.2e-37 158.3 237 41.4
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 9.4e-37 157.9 192 40.1
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.2e-36 157.5 193 45.6
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.2e-36 157.5 229 41.9
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.1e-36 156.8 239 41.0
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.7e-36 156.4 163 49.7
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 2.7e-36 156.4 243 42.0
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 3.6e-36 156.0 176 49.4
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 6.1e-36 155.2 151 52.3
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.0e-35 154.5 179 48.6
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.0e-35 154.5 158 48.7
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.8e-35 153.7 240 43.3
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.3e-35 153.3 230 40.0
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 6.7e-35 151.8 243 41.6
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.7e-35 151.8 169 49.1
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 8.8e-35 151.4 246 41.1
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.1e-34 151.0 167 53.3
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-34 151.0 192 40.1
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.5e-34 150.6 176 48.9
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 2.0e-34 150.2 189 46.0
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 3.3e-34 149.4 228 44.3
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.3e-34 149.4 152 51.3
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.3e-34 149.4 224 39.3
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 4.4e-34 149.1 167 46.1
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 9.7e-34 147.9 238 39.9
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.3e-33 147.5 162 47.5
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.2e-33 146.7 248 39.5
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.2e-33 146.7 191 39.3
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.8e-33 146.4 248 40.3
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.8e-33 146.4 213 43.7
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.8e-33 146.4 235 41.3
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 6.3e-33 145.2 160 50.0
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 8.2e-33 144.8 203 40.9
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.4e-32 144.1 248 39.9
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.8e-32 143.7 211 39.8
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.4e-32 143.3 204 39.7
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.4e-32 143.3 204 39.7
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 3.1e-32 142.9 156 45.5
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 5.3e-32 142.1 190 44.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.1e-32 141.4 248 39.1
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.6e-31 139.8 153 45.8
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 4.5e-31 139.0 158 40.5
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 5.9e-31 138.7 148 48.6
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.0e-30 137.9 155 45.2
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.2e-30 136.7 155 46.5
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 2.9e-30 136.3 231 37.7
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.5e-29 133.3 152 47.4
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.2e-29 132.5 219 42.0
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 7.2e-29 131.7 199 39.2
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 4.7e-28 129.0 223 39.0
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 4.7e-28 129.0 209 39.2
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.0e-27 127.9 221 32.6
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.0e-27 127.9 211 37.4
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.3e-27 126.7 164 47.0
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.0e-27 126.3 166 47.0
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 4.0e-27 125.9 208 37.5
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 6.7e-27 125.2 165 44.2
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 8.8e-27 124.8 180 43.9
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.0e-26 123.6 215 37.2
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 2.6e-26 123.2 188 38.8
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 9.7e-26 121.3 241 36.5
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.3e-25 120.9 161 41.0
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.7e-25 119.4 214 34.1
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 8.2e-25 118.2 164 43.9
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.4e-24 117.5 200 37.5
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.4e-24 117.5 154 43.5
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 4.1e-24 115.9 172 38.4
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 5.3e-24 115.5 191 37.7
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 5.3e-24 115.5 239 32.2
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 7.0e-24 115.2 178 41.0
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 9.1e-24 114.8 157 39.5
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.0e-23 113.6 177 37.3
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.0e-23 113.6 177 37.3
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.3e-22 110.9 211 38.4
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.9e-22 109.8 190 38.4
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.0e-22 109.0 130 48.5
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 5.0e-22 109.0 156 44.9
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.9e-21 107.1 164 42.7
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 2.5e-21 106.7 118 46.6
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.5e-21 106.7 153 37.3
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.2e-21 106.3 165 40.6
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 3.2e-21 106.3 152 36.8
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 5.5e-21 105.5 255 31.4
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 7.2e-21 105.1 171 41.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.6e-20 104.0 130 46.9
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.1e-20 103.6 130 46.9
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 6.8e-19 98.6 158 38.0
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 8.8e-19 98.2 159 38.4
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.8e-16 90.5 152 34.2
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.1e-16 89.4 191 33.5
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 9.1e-16 88.2 144 35.4
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.7e-15 86.7 187 33.2
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.8e-14 82.8 158 34.2
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.0e-14 82.4 224 32.1
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.9e-13 80.5 151 31.1
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.9e-13 80.5 168 30.4
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.5e-13 79.0 81 48.1
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 9.5e-13 78.2 99 41.4
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.2e-12 77.8 64 59.4
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 4.0e-11 72.8 125 32.8
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 3.4e-10 69.7 75 48.0
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.4e-10 69.3 202 28.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 2.8e-09 66.6 125 36.8
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.1e-08 63.2 77 42.9
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 5.4e-08 62.4 78 42.3
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 2.3e-06 57.0 119 31.9
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.8e-06 56.2 152 29.6


User provided reference genes

Program Settings