Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G37620 Arabidopsis lyrata HOM05D007229 ORTHO05D009131 6.6e-88 327.4 173 100.0
AT3G56290 Arabidopsis thaliana HOM05D007229 ORTHO05D009131 3.0e-80 302.0 174 87.9
BcaC08g44777 Brassica carinata HOM05D007229 ORTHO05D009131 3.9e-80 301.6 175 86.9
A07p22880 Brassica napus HOM05D007229 ORTHO05D009131 3.9e-80 301.6 175 86.9
BraA07t29954Z Brassica rapa HOM05D007229 ORTHO05D009131 3.9e-80 301.6 175 86.9
BolC6t37520H Brassica oleracea HOM05D007229 ORTHO05D009131 1.1e-79 300.1 175 86.3
Sp5g06210 Schrenkiella parvula HOM05D007229 ORTHO05D009131 1.5e-79 299.7 176 86.9
CARHR166450 Cardamine hirsuta HOM05D007229 ORTHO05D009131 1.9e-79 299.3 176 85.8
C06p23470 Brassica napus HOM05D007229 ORTHO05D009131 3.3e-79 298.5 175 86.3
Carub.0005s2307 Capsella rubella HOM05D007229 ORTHO05D009131 3.3e-79 298.5 177 85.3
Thhalv10006268m.g Eutrema salsugineum HOM05D007229 ORTHO05D009131 6.2e-78 294.3 177 89.3
BcaC07g39946 Brassica carinata HOM05D007229 ORTHO05D009131 8.1e-78 293.9 175 82.9
C08p31620 Brassica napus HOM05D007229 ORTHO05D009131 8.1e-78 293.9 175 82.9
BolC8t50783H Brassica oleracea HOM05D007229 ORTHO05D009131 8.1e-78 293.9 175 82.9
A09p49260 Brassica napus HOM05D007229 ORTHO05D009131 2.4e-77 292.4 174 82.2
BraA09t40379Z Brassica rapa HOM05D007229 ORTHO05D009131 2.4e-77 292.4 174 82.2
BcaB01g00004 Brassica carinata HOM05D007229 ORTHO05D009131 6.9e-77 290.8 174 82.8
BcaB01g00005 Brassica carinata HOM05D007229 ORTHO05D009131 6.9e-77 290.8 174 82.8
BcaB02g07659 Brassica carinata HOM05D007229 ORTHO05D009131 9.3e-74 280.4 181 83.4
Aa31LG10G11190 Aethionema arabicum HOM05D007229 ORTHO05D009131 1.5e-71 273.1 182 81.3
THA.LOC104824356 Tarenaya hassleriana HOM05D007229 ORTHO05D009131 2.6e-60 235.7 178 72.5
MSTRG.27273 Avicennia marina HOM05D007229 ORTHO05D009131 4.3e-55 218.4 176 64.8
Rhsim09G0184500 Rhododendron simsii HOM05D007229 ORTHO05D009131 7.4e-55 217.6 180 64.4
Oeu020108.1 Olea europaea HOM05D007229 ORTHO05D009131 3.7e-54 215.3 176 64.8
Thecc.10G183800 Theobroma cacao HOM05D007229 ORTHO05D009131 4.8e-54 214.9 174 62.6
Cc02_g05510 Coffea canephora HOM05D007229 ORTHO05D009131 8.2e-54 214.2 176 61.9
Haze_17350 Corylus avellana HOM05D000154 ORTHO05D000092 8.2e-54 214.2 172 64.5
Dinv26059 Davidia involucrata HOM05D007229 ORTHO05D009131 1.8e-53 213.0 177 64.4
Hma1.2p1_2086F.1_g313730 Hydrangea macrophylla HOM05D007229 ORTHO05D009131 3.1e-53 212.2 173 61.8
GSVIVG01032702001 Vitis vinifera HOM05D007229 ORTHO05D009131 3.1e-53 212.2 180 61.7
QL08p064765 Quercus lobata HOM05D007229 ORTHO05D009131 5.3e-53 211.5 175 63.4
Glyma.04G221700 Glycine max HOM05D007229 ORTHO05D009131 2.0e-52 209.5 174 64.4
Sc14g0005610 Simmondsia chinensis HOM05D007229 ORTHO05D009131 2.0e-52 209.5 177 67.2
Gohir.D04G011900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 5.8e-52 208.0 177 62.7
Lj1g0022940 Lotus japonicus HOM05D007229 ORTHO05D009131 7.6e-52 207.6 180 62.2
TAR369G0442 Trochodendron aralioides HOM05D007229 ORTHO05D009131 1.0e-51 207.2 178 59.6
CiPaw.01G306000 Carya illinoinensis HOM05D007229 ORTHO05D009131 1.3e-51 206.8 182 68.1
Os01g0823600 Oryza sativa ssp. japonica HOM05D007229 ORTHO05D009131 1.3e-51 206.8 119 81.5
Gohir.A05G403900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 1.7e-51 206.5 177 62.1
Medtr3g094080 Medicago truncatula HOM05D007229 ORTHO05D009131 1.7e-51 206.5 173 61.8
PGSC0003DMG400024310 Solanum tuberosum HOM05D007229 ORTHO05D009131 1.7e-51 206.5 180 62.8
Gorai.012G014100 Gossypium raimondii HOM05D007229 ORTHO05D009131 2.2e-51 206.1 177 62.1
Manes.10G004800 Manihot esculenta HOM05D007229 ORTHO05D009131 2.2e-51 206.1 177 61.0
Psat5g069080 Pisum sativum HOM05D007229 ORTHO05D009131 2.2e-51 206.1 171 62.0
TWI53G0143 Tripterygium wilfordii HOM05D007229 ORTHO05D009131 2.2e-51 206.1 174 62.6
Glyma.06G143700 Glycine max HOM05D007229 ORTHO05D009131 3.8e-51 205.3 175 62.9
Lj1A965T45 Lonicera japonica HOM05D007229 ORTHO05D009131 3.8e-51 205.3 179 60.3
Duzib114G0482 Durio zibethinus HOM05D007229 ORTHO05D009131 1.1e-50 203.8 176 60.8
Peaxi162Scf00739g00125 Petunia axillaris HOM05D000154 ORTHO05D000092 1.1e-50 203.8 180 65.6
arahy.Tifrunner.gnm1.ann1.I1HNZH Arachis hypogaea HOM05D007229 ORTHO05D009131 3.2e-50 202.2 175 60.6
Sopen06g015630 Solanum pennellii HOM05D007229 ORTHO05D009131 3.2e-50 202.2 119 82.4
Migut.F00594 Erythranthe guttata HOM05D007229 ORTHO05D009131 4.2e-50 201.8 117 79.5
Manes.07G139500 Manihot esculenta HOM05D007229 ORTHO05D009131 4.2e-50 201.8 173 60.7
Sed0026302 Sechium edule HOM05D007229 ORTHO05D009131 4.2e-50 201.8 121 79.3
Hund13463 Selenicereus undatus HOM05D007229 ORTHO05D009131 4.2e-50 201.8 179 61.5
Lalb_Chr11g0067841 Lupinus albus HOM05D007229 ORTHO05D009131 5.5e-50 201.4 172 62.2
SalBow3G2298 Salvia bowleyana HOM05D007229 ORTHO05D009131 5.5e-50 201.4 120 81.7
Solyc06g050170.4 Solanum lycopersicum HOM05D000154 ORTHO05D000092 5.5e-50 201.4 183 61.2
Actinidia00993 Actinidia chinensis HOM05D007229 ORTHO05D009131 7.1e-50 201.1 137 71.5
arahy.Tifrunner.gnm1.ann1.B9ILCP Arachis hypogaea HOM05D007229 ORTHO05D009131 7.1e-50 201.1 175 61.1
CAN.G55.3 Capsicum annuum HOM05D007229 ORTHO05D009131 9.3e-50 200.7 119 79.8
Ciclev10033477m.g Citrus clementina HOM05D007229 ORTHO05D009131 1.6e-49 199.9 174 60.3
FvH4_7g25840 Fragaria vesca HOM05D007229 ORTHO05D009131 2.1e-49 199.5 175 59.4
FAN06G3440 Fragaria x ananassa HOM05D007229 ORTHO05D009131 2.1e-49 199.5 175 59.4
COL.COLO4_19452 Corchorus olitorius HOM05D007229 ORTHO05D009131 2.7e-49 199.1 173 59.0
Sabra19G0072100 Salix brachista HOM05D007229 ORTHO05D009131 2.7e-49 199.1 173 60.1
MELO3C020131.2 Cucumis melo HOM05D007229 ORTHO05D009131 3.5e-49 198.7 169 62.1
Potri.019G056400 Populus trichocarpa HOM05D007229 ORTHO05D009131 3.5e-49 198.7 173 60.7
PGR044G2361 Punica granatum HOM05D007229 ORTHO05D009131 3.5e-49 198.7 178 62.4
SGA_v2.0_scaffold60G20901 Striga asiatica HOM05D007229 ORTHO05D009131 3.5e-49 198.7 173 60.7
Lsat_1_v5_gn_8_13541 Lactuca sativa HOM05D007229 ORTHO05D009131 4.6e-49 198.4 179 58.7
EL10Ac2g04250 Beta vulgaris HOM05D007229 ORTHO05D009131 7.9e-49 197.6 198 55.1
Cpa.g.sc19.82 Carica papaya HOM05D007229 ORTHO05D009131 1.0e-48 197.2 161 62.7
VMungo1309G1820 Vigna mungo HOM05D007229 ORTHO05D009131 1.0e-48 197.2 178 60.7
TPR.G16113 Trifolium pratense HOM05D007229 ORTHO05D009131 2.3e-48 196.1 172 60.5
Phvul.009G142501 Phaseolus vulgaris HOM05D007229 ORTHO05D009131 3.0e-48 195.7 134 71.6
AUR62012362 Chenopodium quinoa HOM05D007229 ORTHO05D009131 3.9e-48 195.3 175 64.6
RcHm_v2.0_Chr1g0372111 Rosa chinensis HOM05D007229 ORTHO05D009131 1.5e-47 193.4 117 77.8
CsaV3_5G010830 Cucumis sativus L. HOM05D007229 ORTHO05D009131 4.3e-47 191.8 121 74.4
ECA233G6234 Erigeron canadensis HOM05D007229 ORTHO05D009131 4.3e-47 191.8 117 74.4
MD07G1232800 Malus domestica HOM05D007229 ORTHO05D009131 4.3e-47 191.8 178 57.3
Prupe.2G263300 Prunus persica HOM05D007229 ORTHO05D009131 4.3e-47 191.8 117 76.9
MBI15_g35108_MAGBIO Magnolia biondii HOM05D007229 ORTHO05D009131 5.7e-47 191.4 119 78.2
CDE12G0285 Ceratophyllum demersum HOM05D007229 ORTHO05D009131 7.4e-47 191.0 178 55.6
ClCG07G004950 Citrullus lanatus HOM05D007229 ORTHO05D009131 9.7e-47 190.7 121 75.2
HPP92_017919 Vanilla planifolia HOM05D007229 ORTHO05D009131 1.3e-46 190.3 133 66.9
DCAR_019811 Daucus carota HOM05D007229 ORTHO05D009131 1.6e-46 189.9 119 75.6
HanXRQChr08g0222581 Helianthus annuus HOM05D007229 ORTHO05D009131 6.3e-46 188.0 181 59.1
Pp3c19_14460 Physcomitrium patens HOM05D007229 ORTHO05D009131 6.3e-46 188.0 119 75.6
PSO339G1638 Papaver somniferum HOM05D007229 ORTHO05D009131 1.1e-45 187.2 117 75.2
PSO384G2154 Papaver somniferum HOM05D007229 ORTHO05D009131 3.1e-45 185.7 117 75.2
CSS0032880 Camellia sinensis var. sinensis HOM05D007229 ORTHO05D009131 4.1e-45 185.3 185 58.9
Duzib106G0259 Durio zibethinus HOM05D007229 ORTHO05D009131 5.3e-45 184.9 137 68.6
AUR62031491 Chenopodium quinoa HOM05D000154 ORTHO05D000092 1.2e-44 183.7 113 76.1
Aqoxy2G00722 Aquilegia oxysepala HOM05D007229 ORTHO05D009131 4.5e-44 181.8 130 68.5
Mapoly0032s0114 Marchantia polymorpha HOM05D007229 ORTHO05D009131 3.8e-43 178.7 120 69.2
SEGI_31216 Sequoiadendron giganteum HOM05D007229 ORTHO05D009131 6.5e-43 177.9 119 69.7
SMO230G0076 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 1.4e-40 170.2 119 68.1
ATR0681G125 Amborella trichopoda HOM05D007229 ORTHO05D009131 3.0e-40 169.1 170 54.7
vmacro09972 Vaccinium macrocarpon HOM05D007229 ORTHO05D009131 2.0e-39 166.4 182 53.8
Nitab4.5_0003695g0030 Nicotiana tabacum HOM05D007229 ORTHO05D009131 2.9e-35 152.5 178 48.9
Nitab4.5_0000109g0540 Nicotiana tabacum HOM05D000154 ORTHO05D009131 3.8e-35 152.1 158 52.5
SMO230G0102 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 3.0e-32 142.5 97 71.1
SMO230G0113 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 3.0e-32 142.5 97 71.1
Sed0009884 Sechium edule HOM05D007229 ORTHO05D009131 7.2e-26 121.3 102 62.7
Ah.10g035980 Amaranthus hybridus HOM05D007229 ORTHO05D009131 2.8e-22 109.4 175 39.4
MD01G1165900 Malus domestica HOM05D000154 ORTHO05D000092 1.4e-21 107.1 56 85.7
Nn2g10342 Nelumbo nucifera HOM05D000154 ORTHO05D000092 1.8e-21 106.7 67 74.6
SabraUnG0004000 Salix brachista HOM05D007229 ORTHO05D009131 4.1e-21 105.5 119 51.3
Zm00001eb149430 Zea mays HOM05D007229 ORTHO05D009131 9.1e-21 104.4 62 82.3
AagrBONN_evm.TU.Sc2ySwM_344.3614 Anthoceros agrestis HOM05D007229 ORTHO05D009131 6.1e-17 91.7 62 74.2
FAN01G1364 Fragaria x ananassa HOM05D007229 ORTHO05D009131 4.8e-14 82.0 111 45.9
Cre03.g144184 Chlamydomonas reinhardtii HOM05D007229 ORTHO05D009131 3.0e-08 62.8 56 57.1
unitig_90.g27575 Utricularia gibba HOM05D007229 ORTHO05D009131 1.5e-07 60.5 75 48.0


User provided reference genes

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