Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 3.2e-102 375.2 199 100.0
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 3.9e-92 341.7 202 93.1
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 2.0e-88 329.3 201 89.6
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 5.3e-81 304.7 209 81.8
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 1.7e-79 299.7 208 82.7
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 2.9e-79 298.9 209 78.9
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 2.6e-72 275.8 207 75.8
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 1.3e-68 263.5 206 72.3
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 4.8e-66 255.0 206 69.4
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 2.0e-64 249.6 205 69.3
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 3.4e-64 248.8 205 69.3
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 3.4e-64 248.8 205 69.3
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 4.2e-62 241.9 206 67.0
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 4.6e-61 238.4 207 66.7
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 5.7e-59 231.5 206 64.1
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 4.2e-54 215.3 206 61.7
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 4.2e-54 215.3 206 61.7
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 3.6e-53 212.2 217 59.4
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.7e-47 193.4 213 54.5
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 6.5e-39 164.9 186 54.3
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 1.1e-38 164.1 141 65.2
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 1.5e-38 163.7 139 66.2
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 2.5e-38 162.9 182 52.2
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 4.2e-38 162.2 184 51.6
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 9.4e-38 161.0 135 65.2
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 9.4e-38 161.0 134 64.2
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 1.6e-37 160.2 146 63.0
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 2.1e-37 159.8 136 64.0
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 2.7e-37 159.5 126 67.5
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 6.1e-37 158.3 199 46.7
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 6.1e-37 158.3 154 57.8
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 1.4e-36 157.1 136 65.4
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 1.8e-36 156.8 218 46.3
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 2.3e-36 156.4 147 59.2
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 3.0e-36 156.0 138 63.0
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 3.0e-36 156.0 142 63.4
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 5.2e-36 155.2 199 49.7
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 5.2e-36 155.2 196 45.9
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 8.8e-36 154.5 156 55.1
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 8.8e-36 154.5 146 60.3
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 1.2e-35 154.1 182 50.5
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 1.5e-35 153.7 133 61.7
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 1.5e-35 153.7 133 61.7
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.0e-35 153.3 156 56.4
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 2.6e-35 152.9 140 60.7
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.6e-35 152.9 114 67.5
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 3.4e-35 152.5 143 61.5
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 7.5e-35 151.4 160 55.6
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 9.8e-35 151.0 147 57.8
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 9.8e-35 151.0 178 50.6
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 1.3e-34 150.6 208 48.1
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 2.8e-34 149.4 132 61.4
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 2.8e-34 149.4 162 52.5
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 3.7e-34 149.1 205 46.8
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 3.7e-34 149.1 237 43.9
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 4.8e-34 148.7 116 65.5
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 4.8e-34 148.7 174 51.7
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 4.8e-34 148.7 148 60.1
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 6.3e-34 148.3 141 58.9
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 6.3e-34 148.3 114 67.5
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 8.3e-34 147.9 165 55.8
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 1.4e-33 147.1 153 56.9
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.4e-33 146.4 150 58.7
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 2.4e-33 146.4 150 58.7
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 2.4e-33 146.4 140 57.1
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 3.1e-33 146.0 221 43.4
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 4.1e-33 145.6 107 70.1
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 4.1e-33 145.6 107 70.1
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 4.1e-33 145.6 146 59.6
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 5.4e-33 145.2 164 54.9
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 7.0e-33 144.8 156 57.1
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 9.1e-33 144.4 150 58.0
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 1.2e-32 144.1 116 64.7
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 1.6e-32 143.7 83 85.5
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 2.7e-32 142.9 156 55.8
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 5.9e-32 141.7 152 52.0
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 5.9e-32 141.7 148 57.4
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 7.7e-32 141.4 169 52.1
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 1.3e-31 140.6 138 60.9
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 2.2e-31 139.8 142 56.3
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 3.8e-31 139.0 162 50.6
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.8e-31 139.0 162 50.6
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.8e-31 139.0 162 50.6
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 6.5e-31 138.3 151 52.3
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 6.5e-31 138.3 162 50.0
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 1.1e-30 137.5 135 57.0
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 5.5e-30 135.2 119 58.0
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 5.5e-30 135.2 147 53.1
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 7.2e-30 134.8 172 48.8
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 1.6e-29 133.7 156 49.4
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 2.1e-29 133.3 148 52.7
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 6.1e-29 131.7 166 50.0
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 8.0e-29 131.3 151 53.0
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 1.8e-28 130.2 133 56.4
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 1.8e-28 130.2 151 53.6
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 3.0e-28 129.4 179 45.8
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 1.2e-27 127.5 167 47.3
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 1.5e-27 127.1 155 49.7
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 2.0e-27 126.7 149 53.7
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 6.3e-26 121.7 129 58.9
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.0e-24 116.7 151 49.7
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 1.3e-23 114.0 149 45.6
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 7.3e-22 108.2 103 61.2
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 3.7e-18 95.9 127 46.5
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 1.1e-17 94.4 127 48.0
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 4.1e-17 92.4 148 43.2
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 1.3e-15 87.4 156 38.5
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 3.6e-13 79.3 109 47.7
Pp3c10_22900 Physcomitrium patens HOM05D033432 ORTHO05D009084 5.6e-06 55.5 133 35.3


User provided reference genes

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