Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 4.3e-245 850.9 429 100.0
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.1e-232 807.7 429 95.6
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.0e-222 775.0 430 92.1
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 3.6e-212 741.5 430 89.5
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 9.9e-210 733.4 429 88.6
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-201 704.9 430 85.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-200 701.8 430 85.3
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-199 699.9 430 84.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-199 699.9 430 84.9
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.7e-199 698.7 429 83.4
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 4.2e-176 621.7 438 73.3
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.5e-173 613.2 439 72.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.3e-173 612.1 438 72.1
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 7.4e-173 610.9 437 72.5
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.6e-170 602.4 428 72.0
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.5e-170 602.1 427 72.6
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.9e-169 599.0 443 71.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-166 590.1 435 70.1
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-165 585.9 432 69.7
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.2e-164 582.8 442 69.2
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-163 579.3 436 68.1
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.1e-163 578.9 432 68.5
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 4.1e-163 578.6 436 67.9
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-162 576.6 433 68.1
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.6e-162 576.6 433 68.1
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-162 576.2 432 68.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-162 576.2 436 67.4
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.5e-162 575.5 436 67.7
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.5e-162 575.5 432 70.1
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 6.5e-161 571.2 432 67.6
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 6.5e-161 571.2 432 67.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-160 569.3 432 66.7
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-160 567.8 436 66.7
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-160 567.8 436 66.7
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 4.7e-159 565.1 433 67.0
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-158 562.8 433 67.0
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-153 547.0 431 70.3
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-150 536.2 435 63.9
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 3.4e-141 505.8 466 58.6
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 7.5e-141 504.6 465 56.8
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 4.9e-140 501.9 458 58.1
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 4.9e-140 501.9 467 57.4
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.1e-139 499.2 460 56.7
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.1e-139 498.8 460 56.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.2e-138 497.3 461 57.5
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.0e-138 496.5 466 56.7
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.5e-138 495.7 460 56.5
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 4.5e-138 495.4 452 57.5
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.3e-137 493.8 432 58.6
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.9e-137 492.3 463 55.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 5.0e-137 491.9 418 56.9
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.6e-137 491.5 447 57.5
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 8.6e-137 491.1 465 56.8
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.9e-136 490.0 451 55.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.9e-136 490.0 449 57.2
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.3e-136 489.2 460 57.8
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.3e-136 488.0 465 56.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.2e-135 487.3 453 56.3
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-135 486.5 465 55.9
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.8e-135 486.1 467 55.0
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.7e-135 485.3 466 55.6
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 6.1e-135 485.0 455 56.3
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.0e-135 484.6 447 56.8
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.0e-134 484.2 463 55.1
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.4e-134 483.8 463 54.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.1e-134 482.6 464 54.7
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 8.9e-134 481.1 469 54.2
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.6e-133 479.6 451 54.3
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.3e-132 477.2 461 55.7
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 3.7e-132 475.7 413 59.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 4.9e-132 475.3 470 54.9
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 6.4e-132 474.9 469 53.5
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 8.3e-132 474.6 469 53.1
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 8.3e-132 474.6 466 53.6
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.9e-131 473.4 451 54.8
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.2e-131 472.6 469 52.7
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 7.0e-131 471.5 466 52.8
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.6e-130 470.3 454 54.6
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.7e-130 469.5 444 55.9
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.6e-130 468.8 469 51.8
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 3.9e-129 465.7 446 54.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 6.6e-129 464.9 466 53.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.1e-128 464.2 435 55.2
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.5e-128 463.8 444 55.2
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.5e-128 463.0 466 53.6
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.3e-128 462.6 445 56.6
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 7.3e-128 461.5 457 52.7
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 9.5e-128 461.1 468 51.1
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 9.5e-128 461.1 442 54.5
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 9.5e-128 461.1 411 55.5
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-126 457.6 433 53.3
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 3.1e-126 456.1 452 53.1
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.5e-125 453.8 442 52.7
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.5e-125 453.8 469 52.9
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.6e-125 453.0 457 51.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.8e-125 451.8 464 52.2
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.7e-124 450.3 441 54.2
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.9e-124 449.5 439 52.2
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 4.9e-124 448.7 468 50.0
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 4.9e-124 448.7 471 51.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.1e-123 447.6 468 51.3
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 7.0e-123 444.9 451 51.7
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 7.0e-123 444.9 422 55.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.1e-122 443.4 459 51.6
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.1e-122 443.4 432 51.9
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.6e-122 442.2 406 53.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.0e-121 441.0 455 51.2
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.7e-121 440.3 434 52.3
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.6e-121 438.3 447 50.6
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.5e-120 437.2 469 50.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.5e-120 437.2 448 50.2
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.1e-119 433.3 420 53.6
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.6e-119 432.6 449 51.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 8.9e-118 427.9 466 49.4
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.2e-117 427.6 445 48.3
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.5e-117 427.2 463 50.5
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 3.4e-117 426.0 463 49.9
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 5.8e-117 425.2 432 52.3
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.7e-116 423.7 451 47.7
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.7e-116 423.7 444 49.3
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.2e-116 423.3 449 50.1
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.2e-116 423.3 461 52.3
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.2e-116 423.3 462 50.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.9e-116 422.9 449 47.9
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.1e-115 419.1 457 49.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.7e-114 416.4 441 48.8
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.7e-114 416.4 446 49.6
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 3.5e-114 416.0 435 51.7
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 4.6e-114 415.6 431 49.9
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 7.8e-114 414.8 444 50.0
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.8e-114 414.8 460 49.6
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.3e-113 414.1 447 49.0
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.3e-112 409.5 457 48.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.1e-110 404.4 465 49.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.1e-110 402.9 432 49.5
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 9.9e-109 397.9 403 51.9
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.4e-107 394.0 457 47.3
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-105 387.5 326 62.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.0e-105 386.3 399 51.1
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.9e-105 386.0 417 48.4
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 6.9e-102 375.2 462 45.9
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.8e-101 372.1 432 47.7
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.7e-100 370.5 456 46.7
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 2.9e-100 369.8 387 49.6
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 7.8e-98 361.7 448 46.7
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.3e-97 360.9 289 61.9
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.3e-97 360.9 289 61.9
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.4e-86 324.3 413 41.6
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.1e-83 314.7 456 40.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.2e-83 312.8 425 41.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.1e-81 305.8 448 39.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-80 304.7 444 39.9
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-78 297.7 444 38.7
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.3e-73 280.4 435 38.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-72 276.9 204 67.2
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 3.3e-72 276.6 204 67.2
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.9e-60 236.9 214 55.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-59 232.3 165 71.5
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 7.9e-58 228.8 305 46.6
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-56 224.9 344 38.4
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.3e-48 196.8 163 59.5
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 5.9e-37 159.5 202 47.5
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 5.5e-35 152.9 280 38.9
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.2e-34 151.8 163 47.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.5e-27 128.3 124 50.0
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 6.3e-23 112.8 124 51.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 9.2e-22 109.0 308 30.5
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.9e-19 101.3 89 58.4
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 6.2e-18 96.3 91 57.1
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 1.2e-10 72.0 99 42.4
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 4.1e-06 57.0 60 55.0
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.2e-06 55.8 68 45.6


User provided reference genes

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