Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G36940 Arabidopsis lyrata HOM05D010817 ORTHO05D000721 2.8e-147 525.4 292 100.0
AT3G55690 Arabidopsis thaliana HOM05D010817 ORTHO05D000721 1.5e-121 439.9 294 86.7
Carub.0005s2246 Capsella rubella HOM05D010817 ORTHO05D000721 9.1e-114 414.1 307 72.6
CARHR165790 Cardamine hirsuta HOM05D010817 ORTHO05D000721 1.3e-88 330.5 311 62.7
Thhalv10010589m.g Eutrema salsugineum HOM05D010817 ORTHO05D000721 3.0e-72 276.2 311 64.0
Sp5g06770 Schrenkiella parvula HOM05D010817 ORTHO05D000721 3.0e-64 249.6 303 62.0
BcaC08g44747 Brassica carinata HOM05D010817 ORTHO05D000721 3.8e-51 206.1 287 50.9
C06p22860 Brassica napus HOM05D010817 ORTHO05D000721 3.8e-51 206.1 287 50.9
BolC6t37484H Brassica oleracea HOM05D010817 ORTHO05D000721 1.1e-50 204.5 285 49.5
BraA07t29934Z Brassica rapa HOM05D010817 ORTHO05D000721 3.5e-49 199.5 278 50.4
BcaB02g07676 Brassica carinata HOM05D010817 ORTHO05D000721 6.6e-48 195.3 295 46.1
A07p22570 Brassica napus HOM05D010817 ORTHO05D000721 1.6e-46 190.7 256 50.8
BcaB02g08403 Brassica carinata HOM05D010817 ORTHO05D000721 2.0e-44 183.7 323 44.3
A04p04300 Brassica napus HOM05D010817 ORTHO05D000721 1.7e-43 180.6 333 42.9
BraA04t16141Z Brassica rapa HOM05D010817 ORTHO05D000721 5.4e-42 175.6 333 41.7
Aa31LG10G10690 Aethionema arabicum HOM05D010817 ORTHO05D000721 1.7e-40 170.6 271 45.0
BolC4t25132H Brassica oleracea HOM05D010817 ORTHO05D000721 1.8e-37 160.6 357 43.7
BcaC02g09784 Brassica carinata HOM05D010817 ORTHO05D000721 5.3e-37 159.1 357 43.4
C04p36650 Brassica napus HOM05D010817 ORTHO05D000721 5.3e-37 159.1 357 43.4
THA.LOC104810062 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 2.2e-35 153.7 342 37.7
THA.LOC104824295 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 6.4e-35 152.1 339 36.6
THA.LOC104809429 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 9.0e-29 131.7 340 32.9
CARHR134790 Cardamine hirsuta HOM05D012316 ORTHO05D000721 1.4e-26 124.4 277 37.2
Aa31LG5G19750 Aethionema arabicum HOM05D001128 ORTHO05D000721 8.7e-24 115.2 284 34.9
AL4G37440 Arabidopsis lyrata HOM05D012316 ORTHO05D000721 9.6e-23 111.7 283 38.2
Carub.0004s2199 Capsella rubella HOM05D012316 ORTHO05D000721 4.0e-21 106.3 283 35.7
BraA04t18487Z Brassica rapa HOM05D012316 ORTHO05D000721 7.6e-20 102.1 253 36.4
Sp4g22160 Schrenkiella parvula HOM05D012316 ORTHO05D000721 1.3e-19 101.3 288 33.7
C04p07640 Brassica napus HOM05D012316 ORTHO05D000721 8.4e-19 98.6 275 34.2
BcaB02g09076 Brassica carinata HOM05D012316 ORTHO05D000721 1.1e-18 98.2 266 34.6
BolC4t28264H Brassica oleracea HOM05D012316 ORTHO05D000721 1.1e-18 98.2 254 37.0
BolC4t22380H Brassica oleracea HOM05D012316 ORTHO05D000721 4.2e-18 96.3 271 34.7
AT2G39870 Arabidopsis thaliana HOM05D012316 ORTHO05D000721 9.3e-18 95.1 278 36.0
BcaC02g12120 Brassica carinata HOM05D012316 ORTHO05D000721 9.3e-18 95.1 275 33.5
Thhalv10017947m.g Eutrema salsugineum HOM05D012316 ORTHO05D000721 1.3e-16 91.3 254 35.4
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 8.7e-16 88.6 333 31.2
A04p30210 Brassica napus HOM05D001949 ORTHO05D003065 5.7e-15 85.9 209 37.8
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 9.7e-15 85.1 301 32.6
FAN01G1897 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.3e-14 84.7 325 31.1
A05p06540 Brassica napus HOM05D012316 ORTHO05D000721 6.3e-14 82.4 271 33.6
Gohir.A05G346700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.3e-14 82.4 302 32.1
BraA05t19623Z Brassica rapa HOM05D012316 ORTHO05D000721 8.2e-14 82.0 271 33.9
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 8.2e-14 82.0 300 32.7
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 1.4e-13 81.3 339 30.1
C04p67650 Brassica napus HOM05D001949 ORTHO05D003065 1.8e-13 80.9 177 39.5
Thecc.10G030500 Theobroma cacao HOM05D001128 ORTHO05D000721 1.8e-13 80.9 335 29.0
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 2.4e-13 80.5 340 30.9
FAN06G2816 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.1e-13 79.7 244 32.8
FAN10G3504 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.1e-13 79.7 244 32.8
FvH4_7g23630 Fragaria vesca HOM05D001128 ORTHO05D000721 5.3e-13 79.3 244 32.8
FAN06G3577 Fragaria x ananassa HOM05D001128 ORTHO05D000721 5.3e-13 79.3 244 32.8
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 5.3e-13 79.3 339 28.6
MD01G1142200 Malus domestica HOM05D001128 ORTHO05D000721 1.5e-12 77.8 332 28.6
FAN03G2145 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.3e-11 74.7 233 32.6
Lj1A946G35 Lonicera japonica HOM05D001128 ORTHO05D000721 1.7e-11 74.3 283 31.8
Cfa001394 Carpinus fangiana HOM05D001128 ORTHO05D000721 2.5e-10 70.5 344 27.6
CiPaw.02G188400 Carya illinoinensis HOM05D001128 ORTHO05D000721 2.5e-10 70.5 349 27.2
QL08p062120 Quercus lobata HOM05D001128 ORTHO05D000721 2.5e-10 70.5 355 28.5
Haze_17155 Corylus avellana HOM05D001128 ORTHO05D000721 5.5e-10 69.3 344 27.3
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.6e-09 66.6 124 44.4
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.6e-09 66.6 124 44.4
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 3.6e-09 66.6 124 44.4
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 7.9e-09 65.5 97 46.4
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.0e-08 65.1 347 27.7
Lj1A945T19 Lonicera japonica HOM05D001128 ORTHO05D000721 1.8e-08 64.3 328 29.6
MD07G1207900 Malus domestica HOM05D001128 ORTHO05D000721 1.8e-08 64.3 308 27.9
Atru.chr12.272 Acer truncatum HOM05D001128 ORTHO05D000721 2.3e-08 63.9 96 47.9
Ca_17132_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 3.0e-08 63.5 356 28.4
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 3.0e-08 63.5 327 26.6
CsaV3_5G008580 Cucumis sativus L. HOM05D001128 ORTHO05D000721 1.1e-07 61.6 319 28.8
MELO3C026566.2 Cucumis melo HOM05D001128 ORTHO05D000721 1.5e-07 61.2 265 28.3
CANSAT56G3374 Cannabis sativa HOM05D001128 ORTHO05D000721 1.9e-07 60.8 360 27.2
Manes.07G123100 Manihot esculenta HOM05D001128 ORTHO05D000721 1.9e-07 60.8 279 29.4
Lj6g0007644 Lotus japonicus HOM05D001128 ORTHO05D000721 2.5e-07 60.5 319 29.2
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 2.5e-07 60.5 295 26.4
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 4.3e-07 59.7 352 25.6
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 4.3e-07 59.7 315 28.6
SalBow1G2079 Salvia bowleyana HOM05D001128 ORTHO05D000721 7.4e-07 58.9 317 28.1
Nitab4.5_0000008g0230 Nicotiana tabacum HOM05D001128 ORTHO05D000721 9.7e-07 58.5 317 25.6
arahy.Tifrunner.gnm1.ann1.1NAQ44 Arachis hypogaea HOM05D001128 ORTHO05D000721 1.3e-06 58.2 327 27.8
Glyma.18G031800 Glycine max HOM05D001128 ORTHO05D000721 1.3e-06 58.2 317 28.7
MSTRG.8291 Avicennia marina HOM05D001128 ORTHO05D000721 2.2e-06 57.4 188 32.4
ClCG07G003770 Citrullus lanatus HOM05D001128 ORTHO05D000721 2.8e-06 57.0 144 34.7
Actinidia02898 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.7e-06 56.6 273 26.4
CiPaw.01G293700 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.7e-06 56.6 107 42.1
Nitab4.5_0003264g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 4.8e-06 56.2 315 25.4
CSS0030928 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 6.3e-06 55.8 340 27.1
Glyma.11G225400 Glycine max HOM05D001128 ORTHO05D000721 8.2e-06 55.5 274 27.4


User provided reference genes

Program Settings