Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 6.3e-112 407.5 217 100.0
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 6.5e-109 397.5 217 97.7
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 4.4e-105 384.8 217 93.1
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.7e-104 382.9 217 93.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.0e-102 375.9 199 96.0
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.9e-101 372.1 217 88.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.9e-101 372.1 217 88.9
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 6.5e-101 370.9 217 88.0
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.5e-100 369.8 217 88.0
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.5e-100 367.9 217 87.6
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-99 365.5 217 87.6
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 4.7e-99 364.8 220 88.2
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 8.8e-98 360.5 220 87.3
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-97 360.1 219 86.3
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 9.8e-97 357.1 220 87.7
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 9.8e-97 357.1 220 87.7
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 9.8e-97 357.1 220 87.7
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 6.4e-88 327.8 211 82.0
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 9.5e-84 313.9 177 94.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.2e-83 313.5 205 80.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.5e-81 306.6 206 83.5
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.0e-77 292.4 206 75.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.5e-76 290.0 199 75.9
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-75 285.8 181 87.8
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 4.7e-75 285.0 229 69.9
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.1e-74 282.3 205 71.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 4.0e-74 282.0 215 70.2
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 4.0e-74 282.0 215 70.2
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 4.0e-74 282.0 222 67.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 4.0e-74 282.0 205 70.2
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.2e-74 281.6 205 71.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.5e-73 280.0 205 71.7
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.5e-73 280.0 230 65.2
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 3.4e-73 278.9 203 70.0
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 5.8e-73 278.1 207 70.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.7e-72 276.6 205 70.2
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 2.9e-72 275.8 209 70.3
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 3.7e-72 275.4 200 70.5
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.9e-72 275.0 204 69.6
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 4.9e-72 275.0 208 69.7
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 4.9e-72 275.0 210 69.0
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-72 274.6 207 69.6
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-72 274.6 207 69.6
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 6.4e-72 274.6 211 68.2
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 6.4e-72 274.6 204 71.1
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 8.3e-72 274.2 207 69.6
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 8.3e-72 274.2 230 63.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 8.3e-72 274.2 232 64.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-71 273.9 208 68.8
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.4e-71 273.5 213 67.1
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.9e-71 273.1 208 68.8
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-71 273.1 208 68.8
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-71 273.1 208 68.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-71 273.1 208 68.8
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.9e-71 273.1 210 67.6
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 4.1e-71 271.9 205 67.8
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 7.1e-71 271.2 208 68.8
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 7.1e-71 271.2 208 68.3
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 9.2e-71 270.8 237 66.2
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 9.2e-71 270.8 205 69.3
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.2e-70 270.4 216 65.7
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.2e-70 270.4 212 65.6
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.6e-70 270.0 204 68.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.1e-70 269.6 196 72.4
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.1e-70 269.6 208 67.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.1e-70 269.6 207 67.6
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.7e-70 269.2 203 68.5
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 3.5e-70 268.9 208 67.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 3.5e-70 268.9 198 69.7
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 4.6e-70 268.5 209 67.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.6e-70 268.5 200 71.0
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.0e-70 268.1 203 68.5
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 6.0e-70 268.1 192 72.9
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.8e-70 267.7 204 68.1
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.8e-70 267.7 204 68.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.8e-70 267.7 203 69.0
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 7.8e-70 267.7 196 71.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.0e-69 267.3 206 68.9
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.7e-69 266.5 203 68.5
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.7e-69 266.5 200 70.5
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.7e-69 266.5 204 67.6
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.0e-69 265.8 207 65.7
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.9e-69 265.4 206 68.0
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.9e-69 265.4 207 68.1
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.1e-69 265.0 205 66.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.1e-69 265.0 205 66.8
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 5.1e-69 265.0 203 67.0
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.1e-69 265.0 206 68.9
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 6.6e-69 264.6 213 66.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 6.6e-69 264.6 203 67.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 8.6e-69 264.2 211 66.4
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.5e-68 263.5 206 66.0
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.5e-68 263.5 205 66.3
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.5e-68 263.5 212 64.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.5e-68 262.7 203 67.5
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 3.3e-68 262.3 202 69.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 7.3e-68 261.2 235 64.3
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 9.5e-68 260.8 223 68.2
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 9.5e-68 260.8 209 66.0
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.1e-67 259.6 211 65.9
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.7e-67 258.5 208 65.9
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 6.2e-67 258.1 199 68.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 8.1e-67 257.7 206 65.5
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.1e-66 257.3 199 66.3
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.1e-66 255.8 205 64.9
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 6.8e-66 254.6 210 63.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.0e-65 253.1 216 63.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.9e-64 249.2 195 64.6
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 4.9e-64 248.4 198 66.7
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 6.4e-64 248.1 208 61.5
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 8.4e-64 247.7 223 59.2
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 8.4e-64 247.7 208 63.5
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 8.4e-64 247.7 193 66.8
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.4e-63 246.1 203 62.6
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 9.2e-63 244.2 215 62.8
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.6e-62 243.4 198 62.1
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.1e-62 243.0 215 62.3
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.9e-61 238.8 199 64.3
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 5.1e-61 238.4 195 65.6
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.9e-60 236.5 189 63.5
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.9e-60 236.5 195 65.1
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.2e-59 233.8 197 61.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.8e-58 229.9 192 60.9
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.6e-57 226.1 195 61.5
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.3e-56 223.8 192 61.5
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.1e-52 210.7 148 70.9
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 5.6e-52 208.4 203 54.2
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.2e-48 196.4 171 59.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 5.4e-47 191.8 209 55.0
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.3e-45 186.4 213 53.1
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 9.9e-41 171.0 125 69.6
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 6.0e-38 161.8 126 65.1
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 4.3e-36 155.6 123 65.9
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 5.6e-36 155.2 196 48.0
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.8e-35 152.9 137 62.0
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.8e-35 152.1 102 72.5
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.6e-33 146.4 114 64.0
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.4e-31 140.6 95 71.6
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.6e-14 82.4 66 66.7
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.6e-12 76.6 62 61.3


User provided reference genes

Program Settings