Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.3e-140 503.1 257 100.0
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 9.4e-131 470.3 258 95.0
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 5.5e-123 444.5 257 90.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.3e-119 433.3 261 86.6
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.5e-117 425.2 261 85.4
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.1e-115 420.2 260 83.8
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.5e-115 417.9 261 83.5
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.1e-114 416.0 264 83.3
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 2.3e-113 412.5 258 82.9
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.3e-113 412.5 261 82.8
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 3.0e-113 412.1 258 82.9
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.0e-112 409.5 258 82.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.7e-111 406.4 259 82.2
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.7e-111 406.4 259 82.2
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.7e-111 405.2 258 82.9
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.8e-111 404.8 261 82.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 8.3e-111 404.1 277 76.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.8e-105 384.4 260 80.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.8e-105 384.0 261 77.4
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 2.8e-103 379.0 258 76.7
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 4.1e-102 375.2 259 77.6
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.6e-101 373.2 261 74.3
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 7.7e-101 370.9 262 73.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.7e-100 369.8 260 75.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.9e-100 369.0 264 73.1
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 6.6e-100 367.9 262 72.9
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.5e-99 366.7 262 72.9
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.9e-99 366.3 261 74.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.9e-99 366.3 261 73.2
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.3e-99 365.2 262 71.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 7.3e-99 364.4 262 72.1
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 9.5e-99 364.0 260 75.4
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.2e-98 363.6 261 72.0
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.2e-98 363.6 260 72.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.1e-98 362.8 260 73.1
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 3.6e-98 362.1 259 75.3
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.6e-98 362.1 260 71.9
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.6e-98 362.1 262 71.8
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.8e-97 359.8 262 71.8
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.3e-97 359.4 262 71.4
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.3e-97 359.4 249 75.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 5.2e-97 358.2 262 70.6
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 6.8e-97 357.8 261 72.0
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.9e-97 357.5 262 70.2
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-96 357.1 262 70.2
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-96 357.1 234 81.2
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.2e-96 357.1 261 71.3
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.2e-96 357.1 256 71.5
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.5e-96 356.7 263 71.5
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.0e-96 356.3 261 71.3
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.0e-96 356.3 261 70.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.4e-96 355.5 262 71.0
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.4e-96 355.5 261 72.4
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.4e-96 355.5 261 72.4
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.4e-96 355.1 261 70.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.4e-96 355.1 262 69.8
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 4.4e-96 355.1 261 72.4
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 7.5e-96 354.4 262 70.6
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 9.8e-96 354.0 262 71.8
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.3e-95 353.6 261 72.4
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-95 353.6 262 71.0
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.3e-95 353.6 268 69.8
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.7e-95 353.2 263 69.2
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.9e-95 352.4 262 69.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.7e-95 352.1 262 71.0
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 6.4e-95 351.3 259 71.0
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-94 350.5 262 70.6
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.4e-94 350.1 259 73.0
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.4e-94 350.1 262 72.5
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.4e-94 350.1 260 71.5
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.8e-94 349.7 262 69.1
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-94 349.7 261 71.6
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.8e-94 349.7 261 71.3
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.4e-94 349.4 261 68.6
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 3.2e-94 349.0 257 70.0
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.1e-94 348.6 262 70.2
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.4e-94 348.2 261 71.3
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 5.4e-94 348.2 262 70.2
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 9.2e-94 347.4 248 72.6
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-93 347.1 262 70.2
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.2e-93 347.1 262 70.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.6e-93 346.7 262 69.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.6e-93 346.7 262 69.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 2.0e-93 346.3 259 69.5
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.0e-93 346.3 261 68.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-93 345.9 262 69.8
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 2.7e-93 345.9 261 70.1
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.5e-93 345.5 262 69.5
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.5e-93 345.5 262 69.5
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.5e-93 345.5 264 67.8
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 4.6e-93 345.1 262 68.7
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.6e-93 345.1 250 72.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 4.6e-93 345.1 263 69.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 5.9e-93 344.7 262 69.5
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.9e-93 344.7 262 69.5
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.0e-92 344.0 261 70.1
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-92 343.6 249 71.5
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.7e-92 343.2 262 68.3
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.3e-92 342.8 257 69.3
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 2.3e-92 342.8 259 68.7
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.1e-91 340.5 284 64.8
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-91 340.5 261 68.6
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.1e-91 340.5 258 69.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.5e-91 340.1 304 62.2
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.9e-91 339.7 262 67.6
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.3e-91 339.0 261 68.2
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 4.3e-91 338.6 261 69.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 4.3e-91 338.6 259 67.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 4.3e-91 338.6 263 67.7
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 9.5e-91 337.4 269 68.0
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 9.5e-91 337.4 263 67.7
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.2e-90 337.0 263 66.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.6e-90 336.7 270 68.1
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.1e-90 336.3 250 70.4
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.6e-90 335.5 254 70.1
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 8.0e-90 334.3 252 69.4
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 8.0e-90 334.3 265 67.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 8.9e-89 330.9 261 67.4
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.2e-88 330.5 252 68.3
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 4.4e-88 328.6 265 67.5
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 5.8e-88 328.2 277 63.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.9e-87 325.9 258 67.8
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.9e-87 325.1 263 66.2
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 3.2e-86 322.4 262 67.2
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.2e-86 322.4 284 62.7
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.2e-85 320.5 257 66.9
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.6e-85 320.1 264 66.7
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.5e-83 313.5 262 66.0
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.5e-83 313.5 258 65.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.9e-83 313.2 256 65.2
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.3e-83 312.4 262 63.4
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.6e-83 311.6 258 64.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.6e-83 311.6 258 64.3
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 7.3e-83 311.2 249 66.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.6e-82 308.9 263 62.4
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.1e-81 307.4 263 63.9
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.1e-81 305.8 256 64.1
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 8.9e-81 304.3 314 55.7
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 8.9e-81 304.3 233 67.8
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 3.4e-80 302.4 264 62.5
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.8e-80 301.6 226 71.7
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 6.4e-79 298.1 257 64.2
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.5e-75 287.0 257 61.1
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 3.3e-75 285.8 270 60.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 5.6e-75 285.0 252 62.7
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 5.6e-75 285.0 206 72.8
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 2.8e-74 282.7 235 63.0
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 6.8e-73 278.1 197 74.6
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 9.2e-70 267.7 194 71.1
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.3e-67 258.1 144 86.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.6e-64 249.6 151 79.5
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.7e-42 176.0 169 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.9e-41 171.8 198 52.0
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.2e-37 161.0 177 50.8
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.1e-37 160.2 263 40.7
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.2e-30 136.3 93 73.1
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.6e-29 132.9 74 90.5
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.1e-27 127.9 239 37.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.2e-26 123.6 78 78.2
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-26 122.9 229 38.0
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.6e-21 107.5 100 64.0
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.4e-17 94.4 153 36.6
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.0e-16 90.5 117 41.9
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.4e-16 89.7 101 51.5
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.2e-14 82.0 55 70.9
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.8e-10 70.1 40 75.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.3e-10 68.9 40 72.5
BolC1t01166H Brassica oleracea HOM05D003984 ORTHO05D033849 4.1e-09 66.2 45 77.8
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 5.9e-08 62.4 160 30.6
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 5.9e-08 62.4 42 64.3
BcaNung04651 Brassica carinata HOM05D034866 ORTHO05D039225 7.7e-08 62.0 107 46.7
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.3e-07 61.2 86 36.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.2e-07 60.5 40 62.5
BraA09t38747Z Brassica rapa HOM05D003984 ORTHO05D033849 1.9e-06 57.4 51 64.7
A09p62400 Brassica napus HOM05D000348 ORTHO05D013806 2.5e-06 57.0 40 67.5
BraA05t21530Z Brassica rapa HOM05D003984 ORTHO05D033849 2.5e-06 57.0 51 64.7
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 5.5e-06 55.8 35 71.4
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 5.5e-06 55.8 32 87.5
C06p30290 Brassica napus HOM05D021762 ORTHO05D013806 7.2e-06 55.5 34 73.5


User provided reference genes

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