Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 6.9e-200 700.7 416 100.0
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.0e-186 656.0 416 93.8
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 4.3e-186 654.8 415 92.5
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 3.6e-180 635.2 418 90.2
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 8.8e-179 630.6 407 91.4
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 5.3e-176 621.3 417 88.2
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 8.5e-174 614.0 421 86.9
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 5.5e-173 611.3 431 82.6
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 5.5e-173 611.3 420 86.4
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 9.4e-173 610.5 419 86.4
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.6e-172 608.6 422 86.0
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.3e-169 600.1 407 76.4
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 3.7e-169 598.6 435 75.4
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 5.5e-165 584.7 418 80.4
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 5.5e-165 584.7 418 80.4
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.0e-150 537.3 402 70.4
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.8e-148 529.3 408 68.6
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 2.6e-146 522.7 417 71.7
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.3e-137 493.8 302 85.1
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.3e-137 493.8 302 85.1
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 2.3e-134 483.0 412 60.9
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 9.5e-133 477.6 413 61.7
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.1e-132 476.5 413 61.5
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.1e-132 476.5 413 61.5
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.1e-131 474.2 406 61.3
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 2.6e-130 469.5 455 56.9
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 3.4e-130 469.2 404 67.3
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 3.4e-130 469.2 413 69.5
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 4.4e-130 468.8 412 60.2
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 5.8e-130 468.4 405 61.0
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 5.8e-130 468.4 408 61.3
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 5.8e-130 468.4 409 61.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 2.2e-129 466.5 416 68.5
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 2.9e-129 466.1 415 60.5
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 4.9e-129 465.3 411 61.1
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 6.4e-129 464.9 406 60.6
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 8.3e-129 464.5 406 60.3
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.4e-128 463.8 411 59.9
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.9e-128 463.4 415 60.2
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.9e-128 463.4 403 60.3
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.4e-128 463.0 403 60.5
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.4e-128 463.0 406 60.1
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 3.2e-128 462.6 327 70.6
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 3.2e-128 462.6 413 60.5
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 3.2e-128 462.6 335 70.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 4.1e-128 462.2 468 56.0
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 5.4e-128 461.8 409 60.9
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 9.2e-128 461.1 411 59.4
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 4.6e-127 458.8 323 71.5
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 6.0e-127 458.4 409 61.1
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 7.8e-127 458.0 416 70.4
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 7.8e-127 458.0 415 59.5
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 1.3e-126 457.2 327 69.4
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 2.3e-126 456.4 408 60.8
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 2.3e-126 456.4 426 57.7
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 3.9e-126 455.7 321 70.7
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 3.9e-126 455.7 415 58.8
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 5.1e-126 455.3 324 69.1
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.9e-125 453.4 409 63.3
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 4.7e-124 448.7 404 59.7
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 8.1e-124 448.0 407 58.5
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 1.8e-123 446.8 397 61.0
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.8e-123 446.8 371 64.2
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 2.3e-123 446.4 406 57.6
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 2.0e-122 443.4 411 59.6
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 7.6e-122 441.4 409 58.7
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 4.9e-121 438.7 315 70.8
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 4.9e-121 438.7 324 68.2
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 7.1e-120 434.9 423 56.0
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 3.5e-119 432.6 365 63.6
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.3e-118 430.6 419 57.8
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.7e-118 430.3 317 67.8
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 3.9e-118 429.1 408 56.9
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 3.9e-118 429.1 305 71.8
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.5e-117 427.2 390 57.2
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 2.5e-117 426.4 329 65.3
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 5.6e-117 425.2 305 71.1
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 7.3e-117 424.9 399 57.6
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.6e-116 423.7 323 65.0
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 4.7e-116 422.2 303 70.6
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.1e-115 421.0 373 59.0
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 2.6e-114 416.4 301 71.8
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 4.4e-114 415.6 377 60.5
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 9.9e-114 414.5 390 55.9
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.7e-113 413.7 336 63.1
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.7e-113 413.7 301 71.8
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.9e-113 412.9 315 65.4
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 3.8e-113 412.5 377 70.8
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 7.1e-112 408.3 319 64.6
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.7e-111 406.4 390 55.9
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.7e-111 406.4 323 63.5
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 2.7e-111 406.4 402 55.5
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.6e-111 405.6 279 73.1
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 4.3e-109 399.1 427 52.5
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.6e-108 397.1 335 62.1
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 3.8e-105 386.0 286 68.5
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 3.2e-104 382.9 332 61.4
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 3.2e-104 382.9 328 62.5
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 4.6e-103 379.0 323 62.8
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 5.1e-102 375.6 404 51.7
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.6e-98 361.7 311 62.1
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.9e-98 361.3 311 61.7
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.7e-97 360.5 311 61.7
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.7e-97 360.5 311 61.7
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 2.2e-97 360.1 315 58.1
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.4e-96 357.5 404 48.3
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.2e-96 356.3 311 61.1
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 7.1e-96 355.1 314 58.0
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.5e-95 352.8 323 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 3.9e-94 349.4 338 53.8
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.9e-88 330.5 270 62.2
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 5.5e-80 302.4 310 50.0
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 3.4e-74 283.1 261 57.1
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.0e-70 270.0 282 55.7
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 5.3e-67 259.2 289 49.1
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 7.7e-66 255.4 180 68.3
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 6.1e-63 245.7 261 50.6
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 2.5e-56 223.8 384 37.2
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.4e-54 218.0 256 48.8
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 2.8e-52 210.3 153 71.2
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.3e-52 209.1 150 66.7
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.4e-45 186.4 144 68.1
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.8e-45 185.3 129 73.6
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 5.0e-41 172.9 133 60.9
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 6.8e-38 162.5 126 65.9
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.5e-37 159.1 115 68.7
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 9.5e-24 115.5 80 68.8
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 5.4e-19 99.8 72 68.1
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 8.6e-17 92.4 153 39.9
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 6.4e-12 76.3 66 62.1
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 2.7e-10 70.9 349 21.8
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 2.3e-09 67.8 71 56.3
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 6.2e-07 59.7 49 63.3
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.8e-06 58.2 50 58.0


User provided reference genes

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