Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.0e-247 859.8 477 100.0
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 5.7e-190 667.9 456 84.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 9.8e-166 587.4 460 72.8
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.6e-155 553.5 419 76.8
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 9.2e-132 474.6 489 60.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.3e-130 470.7 489 58.5
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.7e-130 470.3 489 60.7
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.5e-129 467.2 459 63.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.9e-129 466.8 435 66.2
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-128 463.8 432 67.4
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-128 463.8 437 68.0
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 6.9e-127 458.4 445 61.6
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 4.4e-126 455.7 445 66.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.1e-124 448.4 486 59.1
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.6e-123 447.2 481 57.6
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.7e-104 382.9 421 58.9
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 2.2e-101 373.6 451 53.0
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 6.0e-99 365.5 497 52.7
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 2.5e-97 360.1 501 48.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.1e-96 357.1 495 51.9
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.1e-96 357.1 495 51.7
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.8e-96 356.7 422 52.6
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.0e-94 350.5 506 46.8
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-93 347.8 414 53.1
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 2.2e-93 347.1 421 52.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.9e-93 346.7 499 50.3
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.5e-92 342.4 419 54.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 9.3e-92 341.7 420 52.4
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.1e-91 340.5 421 52.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.0e-90 338.2 450 48.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.5e-89 334.3 499 47.5
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.3e-89 333.2 505 46.5
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.3e-89 332.8 496 45.8
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-88 331.3 496 45.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.6e-88 330.9 505 46.3
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.0e-86 323.9 502 43.6
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 5.9e-86 322.4 507 44.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.7e-86 322.0 504 45.4
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 3.2e-84 316.6 506 45.5
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.0e-82 311.6 503 45.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 3.9e-82 309.7 505 45.1
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 6.7e-82 308.9 502 45.6
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 4.8e-80 302.8 503 39.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.5e-78 297.7 506 42.9
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.6e-78 297.0 485 45.6
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.8e-77 293.1 513 43.3
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 3.8e-77 293.1 500 44.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.4e-76 291.2 501 42.1
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.4e-76 291.2 511 43.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.5e-76 289.3 508 41.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 9.4e-76 288.5 518 38.0
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.6e-75 286.6 500 43.4
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.0e-74 283.5 515 43.1
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.4e-73 278.9 506 40.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.7e-73 278.5 506 42.5
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.3e-72 278.1 505 38.4
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.7e-72 277.7 500 43.8
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.2e-72 277.3 494 44.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 4.8e-72 276.2 499 38.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.4e-71 273.9 498 40.0
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.3e-71 272.7 500 38.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.6e-70 271.2 454 43.4
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.6e-70 270.4 481 43.5
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.5e-70 269.6 493 41.0
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.3e-69 268.1 506 42.9
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 6.5e-69 265.8 497 38.0
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.5e-68 264.6 431 45.0
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.5e-68 264.6 509 39.1
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.0e-66 258.5 500 38.6
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.3e-66 257.3 498 40.2
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.3e-66 257.3 506 40.1
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.0e-66 256.9 497 38.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-65 254.6 492 40.0
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.3e-65 253.4 491 40.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 4.4e-65 253.1 504 39.9
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.2e-64 250.8 524 39.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.2e-64 250.8 513 40.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.2e-64 250.8 507 40.8
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-63 247.7 502 38.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.7e-62 243.8 500 39.8
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.5e-62 243.4 489 35.4
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 4.5e-62 243.0 354 42.7
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 7.7e-62 242.3 491 36.3
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.3e-61 241.5 502 37.8
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.8e-61 240.0 504 36.5
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.8e-61 240.0 484 40.5
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 5.0e-61 239.6 494 36.6
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.5e-60 237.3 497 36.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.2e-60 236.5 494 39.7
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 9.4e-60 235.3 497 39.2
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 9.4e-60 235.3 515 35.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.2e-59 235.0 515 35.7
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.6e-59 234.6 500 38.0
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.6e-59 233.4 491 35.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.6e-59 233.4 523 38.0
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 8.0e-59 232.3 503 40.2
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.0e-58 231.9 495 39.0
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.8e-58 231.1 504 36.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 4.0e-58 229.9 516 36.6
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 8.8e-58 228.8 496 35.5
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.7e-56 223.4 393 39.4
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 3.1e-55 220.3 505 35.8
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.0e-55 219.2 507 37.3
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.6e-54 218.0 515 35.0
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.6e-54 218.0 438 40.6
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 3.5e-54 216.9 492 35.4
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 5.9e-54 216.1 515 34.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 5.9e-54 216.1 467 40.7
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 7.7e-54 215.7 509 35.8
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-53 214.9 507 36.7
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.9e-53 213.8 504 38.3
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.9e-53 213.8 466 38.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.5e-53 212.6 514 35.8
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 6.5e-53 212.6 502 35.3
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-52 211.8 407 40.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-52 211.5 525 37.5
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.5e-52 211.5 430 35.6
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.2e-52 209.1 440 38.4
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.2e-51 208.4 421 39.2
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 3.1e-47 193.7 511 33.9
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.3e-44 183.7 517 32.5
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.1e-43 179.5 443 35.7
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 3.7e-40 170.2 497 35.2
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.4e-39 168.3 440 37.7
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.7e-38 164.1 495 35.4
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 3.9e-37 160.2 426 37.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.1e-35 154.5 481 31.4
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 6.2e-35 152.9 400 33.8
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 8.0e-35 152.5 352 34.1
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 8.0e-35 152.5 400 33.5
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 4.0e-34 150.2 400 33.2
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 9.8e-33 145.6 381 34.9
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.7e-32 144.8 265 40.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.7e-32 143.7 489 29.9
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.9e-32 143.3 353 36.3
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-30 138.7 346 34.4
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.6e-30 138.3 344 32.3
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 8.6e-29 132.5 483 29.2
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.1e-26 125.6 353 33.1
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.8e-26 124.8 114 55.3
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.8e-26 124.8 300 32.0
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 2.3e-26 124.4 204 42.2
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.2e-25 122.1 381 30.7
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.4e-25 120.6 432 30.6
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 3.7e-24 117.1 480 27.9
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.6e-22 111.7 135 48.9
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-20 105.5 114 64.9
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 7.3e-20 102.8 143 47.6
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 9.5e-20 102.4 496 29.4
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 5.2e-18 96.7 143 41.3
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.0e-17 94.7 168 35.7
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.3e-16 92.0 57 80.7
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.9e-16 90.9 501 25.1
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.1e-15 89.0 201 37.8
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.0e-13 82.4 196 33.2
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.5e-12 78.6 201 29.9
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.6e-12 76.6 142 35.9
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 5.6e-12 76.6 59 62.7
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.8e-11 74.3 204 26.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 8.1e-11 72.8 193 32.6
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 6.9e-10 69.7 458 24.2
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-09 68.9 46 71.7
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 3.4e-09 67.4 270 29.3
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 9.9e-09 65.9 166 34.3
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 2.9e-08 64.3 274 25.9
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.8e-08 63.9 217 29.5
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.4e-08 62.8 104 36.5
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 3.2e-07 60.8 368 25.0
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.2e-07 60.5 100 37.0
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.4e-07 60.1 403 23.3
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 1.6e-06 58.5 203 30.5
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.1e-06 58.2 193 26.4


User provided reference genes

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