Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.6e-174 614.8 303 100.0
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 8.7e-168 593.6 303 96.0
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 4.2e-154 548.1 307 87.6
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 8.7e-136 487.3 305 79.3
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 2.2e-134 482.6 305 79.3
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 6.7e-112 407.9 311 70.1
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 8.8e-112 407.5 311 74.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 7.0e-109 397.9 310 73.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 9.1e-109 397.5 310 72.6
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.6e-108 396.7 310 72.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 2.7e-108 396.0 310 72.9
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 2.7e-108 396.0 310 72.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.0e-107 394.0 313 71.6
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.6e-105 386.7 314 66.9
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 6.8e-96 354.8 309 62.1
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 5.0e-91 338.6 308 60.7
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 2.5e-90 336.3 312 61.2
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 4.3e-90 335.5 309 59.2
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.4e-88 330.5 306 60.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 3.0e-88 329.3 303 60.7
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 4.0e-88 328.9 311 58.2
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 4.0e-88 328.9 321 57.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 6.8e-88 328.2 317 56.8
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 6.8e-88 328.2 316 57.0
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 8.9e-88 327.8 311 58.8
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 2.0e-87 326.6 308 59.1
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.0e-87 326.6 313 57.8
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.4e-87 325.9 311 57.9
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 4.4e-87 325.5 307 61.2
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 5.7e-87 325.1 312 59.3
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 7.5e-87 324.7 322 58.7
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.2e-86 323.2 309 57.9
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.9e-86 322.0 309 56.3
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 7.0e-85 318.2 338 55.0
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 2.0e-84 316.6 338 54.7
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 4.6e-84 315.5 308 57.5
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 4.6e-84 315.5 314 56.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 5.9e-84 315.1 325 56.0
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 7.8e-84 314.7 310 58.1
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.0e-83 314.3 325 56.0
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 5.0e-83 312.0 315 57.1
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.9e-82 310.1 325 55.1
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.6e-82 308.5 322 57.1
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.1e-81 306.6 314 54.1
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.1e-81 306.6 315 54.9
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 3.6e-81 305.8 303 56.4
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 5.2e-80 302.0 311 58.5
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 5.2e-80 302.0 311 58.5
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 6.8e-80 301.6 314 55.7
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.5e-79 300.4 306 57.8
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.0e-79 300.1 308 54.2
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-78 297.4 305 58.7
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.3e-78 297.4 307 53.4
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 2.9e-78 296.2 318 55.0
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.9e-78 295.4 305 58.4
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.9e-77 293.5 308 54.2
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.2e-77 292.7 305 57.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 3.2e-77 292.7 306 51.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-76 290.8 308 57.8
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 1.6e-76 290.4 328 55.8
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.0e-76 290.0 312 54.8
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 3.5e-76 289.3 315 54.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 7.8e-76 288.1 315 54.0
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.3e-75 286.6 325 52.3
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-75 286.2 307 53.4
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-75 286.2 307 53.1
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 3.0e-75 286.2 309 54.0
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.5e-74 283.1 311 53.4
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 9.5e-74 281.2 305 53.4
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.1e-73 280.0 306 54.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 4.7e-73 278.9 313 53.7
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 6.2e-73 278.5 310 52.9
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 8.1e-73 278.1 310 51.9
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 2.3e-72 276.6 310 51.9
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 4.0e-72 275.8 310 52.3
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.2e-71 274.2 304 51.6
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 1.5e-71 273.9 317 53.3
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.0e-71 273.5 307 52.1
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.6e-71 273.1 315 52.7
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 4.4e-71 272.3 312 52.6
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 7.5e-71 271.6 309 51.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 7.5e-71 271.6 316 52.2
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.4e-69 267.3 311 53.1
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.9e-69 266.9 313 54.6
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 7.1e-69 265.0 314 51.9
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 7.8e-68 261.5 300 54.7
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.0e-67 261.2 254 57.1
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.0e-67 261.2 286 51.7
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.0e-67 261.2 312 51.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.7e-67 260.4 315 52.1
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 3.9e-67 259.2 313 49.8
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.6e-65 253.8 232 58.6
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.8e-64 250.4 396 40.7
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 4.4e-63 245.7 285 51.6
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 5.8e-63 245.4 256 59.0
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-62 244.2 348 45.1
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.2e-62 243.4 356 45.5
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 2.9e-62 243.0 310 47.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 8.4e-62 241.5 347 46.1
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 5.4e-61 238.8 308 47.7
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 2.1e-60 236.9 286 53.1
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.3e-59 234.2 307 47.6
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 5.1e-59 232.3 306 46.4
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 7.3e-58 228.4 308 45.8
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.1e-56 224.6 306 44.4
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.1e-56 224.6 307 45.3
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 1.4e-56 224.2 337 45.1
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.4e-56 223.4 306 44.1
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.5e-55 220.7 304 47.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.8e-55 218.8 249 55.4
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 7.6e-55 218.4 314 46.8
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.2e-54 216.9 285 48.1
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 2.3e-51 206.8 286 51.0
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 3.9e-51 206.1 311 42.8
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 5.1e-51 205.7 286 50.7
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 6.6e-51 205.3 286 50.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.6e-49 200.7 218 55.0
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.6e-49 199.5 304 43.1
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.8e-49 199.1 182 61.5
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.8e-48 197.2 182 61.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 4.0e-48 196.1 302 42.4
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.7e-46 190.7 305 41.3
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 4.2e-45 186.0 206 50.0
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.3e-43 181.0 169 60.4
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.7e-43 178.3 145 59.3
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.7e-38 164.1 286 42.3
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.1e-37 161.4 362 36.7
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 9.3e-37 158.3 289 43.3
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-36 157.9 241 44.0
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 1.0e-35 154.8 197 45.7
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.3e-34 149.8 116 62.9
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 3.7e-33 146.4 116 57.8
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.4e-32 144.4 215 43.3
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 5.3e-32 142.5 168 46.4
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-31 141.4 115 56.5
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.3e-30 137.9 148 50.0
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 2.1e-28 130.6 129 61.2
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-27 126.7 103 56.3
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 3.9e-27 126.3 104 68.3
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 5.1e-27 125.9 173 43.4
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 8.7e-27 125.2 173 43.4
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.9e-26 124.0 158 43.0
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.6e-25 120.9 159 40.9
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.2e-22 110.5 108 62.0
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 7.2e-21 105.5 249 33.7
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-20 104.8 131 45.8
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 7.9e-20 102.1 111 57.7
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 8.2e-17 92.0 182 41.8
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-16 91.7 56 82.1
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 1.1e-16 91.7 84 60.7
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-15 87.8 76 57.9
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 1.1e-13 81.6 67 65.7
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 1.1e-13 81.6 67 65.7
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 4.2e-13 79.7 67 64.2
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 7.9e-12 75.5 76 55.3
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.3e-11 73.9 154 41.6
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.7e-09 67.8 58 60.3
BolC4t25439H Brassica oleracea HOM05D038158 ORTHO05D042869 1.1e-08 65.1 64 57.8
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 9.1e-08 62.0 56 50.0
AL5G35160 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.2e-07 61.6 45 68.9
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-07 60.8 38 71.1


User provided reference genes

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