Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 5.3e-212 740.7 363 100.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.8e-204 715.7 363 96.4
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.8e-196 689.1 365 93.4
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 5.3e-196 687.6 365 93.4
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 5.7e-190 667.5 364 90.7
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.3e-189 666.4 366 90.2
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 8.2e-189 663.7 366 89.1
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.5e-187 659.4 364 89.0
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 8.5e-186 653.7 365 88.2
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.5e-185 652.1 366 89.1
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 3.2e-185 651.7 368 88.9
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 4.6e-184 647.9 367 88.0
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-183 646.0 366 88.0
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.8e-183 646.0 366 88.0
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 5.1e-183 644.4 368 88.0
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.5e-182 642.9 364 87.4
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 5.9e-179 630.9 363 83.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.1e-176 622.5 362 83.1
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.1e-174 616.7 363 82.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 8.2e-173 610.5 364 83.0
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.1e-172 610.1 364 83.0
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 9.1e-172 607.1 366 81.4
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.4e-171 605.1 366 81.1
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 2.0e-166 589.3 363 78.5
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 6.5e-162 574.3 336 85.7
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 2.7e-160 568.9 363 75.8
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 8.8e-159 563.9 364 74.7
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.7e-157 559.7 364 74.7
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.7e-157 559.7 365 74.5
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 3.7e-157 558.5 370 73.8
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 4.8e-157 558.1 363 74.9
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 1.8e-156 556.2 364 74.7
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 7.0e-156 554.3 370 73.0
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.7e-155 552.4 369 73.7
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 1.0e-154 550.4 363 74.1
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 2.9e-154 548.9 367 71.9
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.5e-153 546.6 362 72.7
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.5e-153 546.6 368 72.3
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.5e-153 545.8 371 72.2
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 4.2e-153 545.0 302 83.8
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.2e-152 543.5 311 82.0
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 3.6e-152 542.0 365 72.9
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.6e-152 542.0 364 72.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 6.1e-152 541.2 364 72.5
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 8.0e-152 540.8 366 73.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.0e-151 540.4 367 70.8
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.4e-151 540.0 302 82.8
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.8e-151 539.7 364 73.4
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 8.8e-151 537.3 311 80.7
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.5e-150 536.6 356 73.6
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.5e-150 536.6 372 71.5
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.0e-150 536.2 320 79.1
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.0e-150 536.2 371 72.0
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.0e-150 536.2 369 72.1
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 2.6e-150 535.8 368 70.7
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 2.2e-149 532.7 364 71.4
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 3.7e-149 531.9 363 72.7
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 3.7e-149 531.9 320 78.1
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 4.8e-149 531.6 365 70.1
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 6.3e-149 531.2 364 76.4
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 8.3e-149 530.8 361 70.9
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.1e-148 530.4 364 71.4
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 3.1e-148 528.9 378 69.0
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.1e-148 528.5 364 71.2
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 5.4e-148 528.1 371 70.4
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 3.5e-147 525.4 320 76.6
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.5e-147 525.0 358 68.2
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 5.9e-147 524.6 369 69.4
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.9e-147 524.6 367 71.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.0e-146 523.9 301 81.4
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.3e-146 523.5 319 77.4
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.7e-146 523.1 387 67.2
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.7e-146 523.1 366 69.9
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.3e-146 522.7 302 79.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.3e-146 522.7 364 72.0
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.3e-146 522.7 326 76.4
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 6.5e-146 521.2 328 76.8
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 8.6e-146 520.8 336 80.4
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 8.6e-146 520.8 352 69.9
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.5e-145 520.0 368 68.5
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 1.9e-145 519.6 367 70.0
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.5e-145 519.2 356 71.3
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.2e-144 516.9 363 68.6
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.6e-144 516.5 358 69.6
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 2.1e-144 516.2 319 75.2
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.8e-144 515.8 361 69.8
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 4.7e-144 515.0 368 68.5
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 8.0e-144 514.2 363 68.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.0e-143 513.8 320 75.0
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.8e-143 513.1 363 68.9
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 5.2e-143 511.5 296 78.4
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 8.9e-143 510.8 365 68.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 5.7e-142 508.1 321 72.9
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 9.8e-142 507.3 299 78.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.8e-141 505.8 363 70.2
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 2.8e-141 505.8 357 67.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 8.3e-141 504.2 317 75.4
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.1e-140 503.8 360 70.3
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.1e-140 503.8 362 67.7
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.4e-140 503.4 371 67.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.4e-140 503.4 319 75.5
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 5.4e-140 501.5 366 67.2
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 5.4e-140 501.5 358 68.4
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 2.9e-138 495.7 291 77.3
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.5e-137 493.4 364 66.5
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 4.7e-136 488.4 350 68.9
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.4e-135 486.9 320 72.5
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 7.5e-134 481.1 483 53.4
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.2e-133 479.6 387 63.0
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.4e-132 476.9 319 72.1
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.6e-131 473.4 387 63.0
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.2e-128 463.8 328 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.6e-126 456.1 292 71.6
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.3e-125 453.8 277 78.3
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 5.0e-122 441.8 333 65.2
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-120 437.2 336 71.4
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.7e-120 435.3 286 71.0
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.9e-116 423.3 286 70.3
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.3e-109 400.6 242 76.0
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.3e-109 400.6 291 65.3
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.9e-108 396.7 318 61.6
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 6.2e-104 381.7 282 66.0
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.3e-101 374.0 285 61.8
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 3.5e-99 365.9 254 70.9
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 4.3e-97 359.0 245 69.8
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 8.1e-96 354.8 294 58.2
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 3.1e-95 352.8 256 67.2
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.8e-85 319.3 290 56.2
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 6.5e-77 292.0 168 80.4
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 3.2e-76 289.7 159 83.0
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 3.7e-64 249.6 229 55.9
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 4.7e-59 232.6 127 82.7
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-57 227.3 147 76.2
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 7.4e-57 225.3 126 79.4
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.5e-53 212.2 325 42.8
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 8.0e-51 205.3 147 70.7
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-48 196.8 147 69.4
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 7.2e-44 182.2 203 50.7
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.4e-44 181.8 100 80.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.7e-41 171.8 95 81.1
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 7.2e-36 155.6 108 65.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 9.5e-28 128.6 72 81.9
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.1e-23 113.2 67 79.1
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.1e-23 113.2 67 79.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.5e-22 110.2 64 79.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.2e-19 101.7 81 58.0
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 4.7e-19 99.8 57 77.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.2e-16 90.9 45 88.9
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 4.9e-16 89.7 101 48.5
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 8.3e-16 89.0 100 49.0
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 3.3e-12 77.0 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.2e-11 75.1 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-09 67.4 37 86.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.1e-07 62.0 77 48.1
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 3.2e-07 60.5 50 56.0
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 7.0e-07 59.3 51 60.8
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 7.0e-07 59.3 117 29.9


User provided reference genes

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