Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.1e-127 459.9 226 100.0
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.0e-120 434.5 226 90.3
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 3.9e-112 408.3 226 85.4
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.4e-108 394.8 226 82.3
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.7e-107 391.7 226 81.0
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.2e-106 388.7 226 80.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.6e-105 386.3 226 81.4
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.6e-105 384.8 226 79.6
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 5.0e-104 381.3 226 79.2
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 6.6e-104 380.9 226 79.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 8.6e-104 380.6 226 78.8
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 8.1e-94 347.4 227 75.8
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 4.0e-93 345.1 226 74.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 6.8e-93 344.4 227 75.3
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.3e-91 340.1 226 74.3
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 8.6e-88 327.4 228 71.1
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.2e-81 307.0 227 69.2
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 6.6e-80 301.2 198 72.2
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 6.6e-80 301.2 227 68.3
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 8.1e-70 267.7 224 61.6
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.9e-67 259.2 227 56.8
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 3.8e-67 258.8 229 55.9
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.2e-65 253.8 189 63.5
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 2.7e-65 252.7 212 59.9
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 3.5e-65 252.3 214 57.9
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.5e-65 252.3 228 56.1
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.3e-64 250.4 229 56.8
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 3.0e-64 249.2 228 57.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.0e-64 249.2 216 55.6
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.1e-63 247.3 217 57.6
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-63 247.3 213 56.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 5.6e-63 245.0 214 57.5
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 7.4e-63 244.6 211 56.4
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 9.6e-63 244.2 208 57.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-62 243.8 237 51.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.6e-62 243.4 212 57.1
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.6e-62 243.4 215 56.3
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.6e-62 243.4 196 60.7
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.1e-62 243.0 229 55.9
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.8e-62 241.9 224 54.9
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 4.8e-62 241.9 227 58.1
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 8.1e-62 241.1 213 57.3
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.4e-61 240.4 213 55.4
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 3.1e-61 239.2 223 55.6
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 4.0e-61 238.8 162 68.5
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 5.3e-61 238.4 228 55.7
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 5.3e-61 238.4 213 54.0
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.2e-60 237.3 215 59.1
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.5e-60 236.9 209 56.0
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.5e-60 236.9 229 52.4
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.5e-60 236.9 213 56.8
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.0e-59 234.2 229 57.2
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.0e-59 234.2 211 57.3
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-59 233.8 213 57.3
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.3e-59 233.8 202 56.9
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.3e-59 233.8 214 58.4
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.7e-59 233.4 209 57.4
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.7e-59 233.4 211 54.5
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.2e-59 233.0 214 55.1
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.2e-59 233.0 255 47.1
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.9e-59 232.6 214 54.7
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 4.9e-59 231.9 249 47.8
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.1e-58 230.7 213 56.8
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.1e-58 230.7 212 54.2
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.9e-58 229.9 199 58.3
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.9e-58 229.9 216 53.7
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.9e-58 229.9 228 56.6
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.5e-58 229.6 211 55.0
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.5e-58 229.6 214 55.1
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.2e-58 229.2 212 53.8
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 3.2e-58 229.2 215 57.7
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.2e-58 229.2 215 57.2
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.2e-58 229.2 215 57.7
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 4.2e-58 228.8 215 53.5
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 5.5e-58 228.4 190 57.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 9.3e-58 227.6 219 52.1
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 9.3e-58 227.6 190 57.4
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 9.3e-58 227.6 204 56.4
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 9.3e-58 227.6 214 54.7
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.2e-57 227.3 204 55.4
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.6e-57 226.9 215 53.0
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.6e-57 226.9 213 53.1
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 2.7e-57 226.1 190 57.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.5e-57 225.7 224 53.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.5e-57 225.7 218 51.8
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 4.6e-57 225.3 210 54.3
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.6e-57 225.3 195 59.0
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 6.0e-57 224.9 219 51.6
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 7.9e-57 224.6 204 55.9
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.0e-56 224.2 216 52.8
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.8e-56 223.4 215 52.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 1.8e-56 223.4 215 55.3
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.8e-56 223.4 211 54.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 2.3e-56 223.0 213 56.8
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.3e-56 223.0 215 56.7
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 3.0e-56 222.6 228 53.1
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.9e-56 222.2 221 52.0
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 5.1e-56 221.9 216 55.6
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 5.1e-56 221.9 220 51.4
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 5.1e-56 221.9 209 54.5
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 6.7e-56 221.5 218 55.5
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 8.7e-56 221.1 231 50.2
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 8.7e-56 221.1 211 53.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.1e-55 220.7 209 55.0
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.5e-55 220.3 190 57.4
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.5e-55 219.5 230 53.5
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 2.5e-55 219.5 208 51.4
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 3.3e-55 219.2 231 48.9
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.7e-55 218.4 209 55.5
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 5.7e-55 218.4 212 49.5
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.4e-55 218.0 221 54.8
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.3e-54 217.2 209 51.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.6e-54 216.9 196 55.1
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.6e-54 216.9 210 53.3
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.1e-54 216.5 205 54.6
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.8e-54 216.1 218 50.9
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.8e-54 215.3 229 48.9
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.8e-54 215.3 219 52.5
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 8.2e-54 214.5 205 53.7
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 8.2e-54 214.5 205 54.6
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-53 214.2 222 51.4
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.1e-53 214.2 230 49.6
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-53 213.8 219 49.8
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.4e-53 213.8 206 52.4
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.8e-53 213.4 200 53.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.1e-53 212.6 237 47.7
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 4.1e-53 212.2 216 53.7
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 5.3e-53 211.8 222 50.9
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 9.0e-53 211.1 237 49.4
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.7e-51 206.8 205 50.7
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.8e-51 205.7 212 48.1
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 3.5e-49 199.1 209 50.2
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.5e-49 199.1 207 49.3
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.3e-48 197.2 208 48.6
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.8e-48 196.8 189 51.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 2.3e-48 196.4 217 47.9
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.9e-47 193.4 199 47.2
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 7.4e-47 191.4 201 48.8
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 2.8e-46 189.5 173 55.5
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.7e-46 189.1 199 48.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.7e-46 189.1 199 48.7
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 4.8e-46 188.7 150 62.7
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 2.4e-45 186.4 236 45.8
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.5e-44 183.7 203 50.2
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 2.0e-44 183.3 263 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 2.6e-44 183.0 220 44.5
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.6e-44 183.0 195 47.2
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.0e-39 166.8 225 45.8
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 7.4e-39 164.9 140 57.9
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.3e-38 164.1 137 59.1
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.4e-37 159.8 184 45.1
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.5e-36 157.1 219 42.0
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 5.9e-36 155.2 220 42.7
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 2.2e-35 153.3 86 86.0
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 3.8e-35 152.5 219 41.6
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.2e-33 147.5 213 40.8
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.7e-30 137.1 143 54.5
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.7e-30 136.0 142 52.1
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.1e-29 134.4 143 49.7
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.1e-29 132.9 161 49.1
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.5e-28 129.4 143 46.9
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 4.5e-28 129.0 115 53.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.2e-26 122.5 180 39.4
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 5.5e-18 95.5 108 45.4
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.1e-17 93.6 64 64.1
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.8e-16 88.6 71 57.7
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 7.5e-15 85.1 162 34.6
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.2e-14 83.6 71 53.5
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 8.3e-14 81.6 112 38.4
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 7.7e-12 75.1 113 36.3
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.5e-11 72.0 62 58.1
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.7e-09 66.6 55 54.5
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 3.6e-09 66.2 72 47.2
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.8e-08 61.6 93 38.7
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.6e-07 60.1 93 38.7
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 3.4e-07 59.7 72 44.4
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 7.5e-07 58.5 92 43.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 9.8e-07 58.2 100 37.0
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 6.3e-06 55.5 75 40.0
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.3e-06 55.1 83 43.4
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 8.3e-06 55.1 83 43.4


User provided reference genes

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