Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 3.2e-271 937.9 516 100.0
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 3.8e-224 781.6 519 84.6
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 4.5e-201 704.9 515 81.2
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 3.7e-179 632.1 532 71.6
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 2.1e-177 626.3 572 65.9
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 1.5e-175 620.2 522 70.5
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 2.7e-137 493.0 561 58.3
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 2.7e-137 493.0 561 58.3
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 9.7e-135 484.6 565 57.0
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 2.4e-133 479.9 568 57.2
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 7.7e-132 474.9 568 56.9
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 4.3e-127 459.1 585 55.2
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 1.8e-120 437.2 599 51.9
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.8e-101 374.0 686 43.6
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.0e-95 354.0 660 43.3
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 4.4e-55 219.9 335 43.6
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 3.2e-53 213.8 325 45.5
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 7.1e-53 212.6 362 42.3
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 5.6e-50 203.0 478 36.4
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 7.3e-50 202.6 285 46.0
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.8e-49 200.7 274 46.0
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 4.8e-49 199.9 276 48.6
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 8.1e-49 199.1 437 38.0
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 1.1e-48 198.7 577 35.2
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.4e-48 198.4 275 47.6
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 3.1e-48 197.2 320 45.0
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 6.9e-48 196.1 504 36.9
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.5e-47 194.9 481 36.8
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 4.4e-47 193.4 472 36.9
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 9.9e-47 192.2 472 36.2
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.3e-46 191.8 489 36.2
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.3e-46 191.8 268 48.1
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.3e-46 191.8 268 48.1
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 3.8e-46 190.3 551 34.7
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.9e-46 189.9 467 35.1
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 6.4e-46 189.5 271 46.1
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 6.4e-46 189.5 282 45.0
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.4e-45 188.3 278 44.6
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.9e-45 188.0 500 35.4
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.4e-45 187.6 278 45.0
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.2e-45 187.2 472 36.2
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 3.2e-45 187.2 297 43.4
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 3.2e-45 187.2 278 44.2
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 9.3e-45 185.7 295 42.0
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 9.3e-45 185.7 279 44.4
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 9.3e-45 185.7 294 43.5
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.2e-44 185.3 521 37.6
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.6e-44 184.9 480 36.9
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 2.7e-44 184.1 269 46.5
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 3.5e-44 183.7 403 38.7
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 4.6e-44 183.3 505 36.6
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 7.8e-44 182.6 468 36.1
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 7.8e-44 182.6 310 42.3
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 1.0e-43 182.2 272 41.9
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.0e-43 182.2 464 37.5
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 2.3e-43 181.0 287 42.5
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.3e-43 181.0 473 35.9
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 5.1e-43 179.9 343 41.1
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 5.1e-43 179.9 343 41.1
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 5.1e-43 179.9 499 35.7
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 3.3e-42 177.2 447 37.6
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 4.3e-42 176.8 476 37.0
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.6e-42 176.4 299 42.8
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 7.3e-42 176.0 285 43.9
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 2.8e-41 174.1 281 42.7
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 6.2e-41 172.9 438 35.6
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 6.2e-41 172.9 538 33.6
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 6.2e-41 172.9 273 45.1
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 8.1e-41 172.6 341 38.1
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.1e-40 172.2 533 34.3
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.8e-40 171.4 277 42.6
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 3.1e-40 170.6 277 41.5
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 3.1e-40 170.6 448 33.7
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 6.9e-40 169.5 294 42.2
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 9.0e-40 169.1 469 33.5
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 1.5e-39 168.3 291 42.3
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.0e-39 167.9 476 34.9
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.6e-39 167.5 281 40.9
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 2.6e-39 167.5 408 33.6
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 7.6e-39 166.0 335 38.2
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 9.9e-39 165.6 349 37.8
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 1.7e-38 164.9 474 34.2
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.7e-38 164.9 275 39.3
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 2.2e-38 164.5 282 41.5
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.2e-38 164.5 532 36.1
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 4.9e-38 163.3 532 35.9
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 4.9e-38 163.3 262 43.5
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 6.4e-38 162.9 300 40.7
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 6.4e-38 162.9 469 34.8
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 8.4e-38 162.5 281 41.3
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.9e-37 161.4 424 33.7
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.9e-37 161.4 349 37.0
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 5.4e-37 159.8 305 39.7
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 5.4e-37 159.8 437 35.2
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 7.1e-37 159.5 303 39.3
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 2.7e-36 157.5 486 35.8
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 6.0e-36 156.4 441 33.3
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.0e-35 155.6 433 33.5
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 1.3e-35 155.2 432 36.3
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.3e-35 155.2 336 37.8
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 1.8e-35 154.8 278 39.2
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 3.0e-35 154.1 260 43.5
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 6.7e-35 152.9 480 32.1
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 2.8e-33 147.5 448 33.5
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.1e-32 145.6 394 33.5
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 4.9e-30 136.7 268 39.6
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 1.1e-29 135.6 382 35.3
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 4.2e-29 133.7 274 34.7
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 7.9e-28 129.4 244 39.3
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 1.3e-27 128.6 311 33.4
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 2.5e-26 124.4 268 34.3
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 9.6e-26 122.5 147 47.6
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 1.6e-25 121.7 273 35.9
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 9.0e-24 115.9 255 36.5
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 7.6e-23 112.8 214 42.1
BraA07t29844Z Brassica rapa HOM05D005322 ORTHO05D024197 2.2e-22 111.3 74 79.7
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.9e-22 110.9 272 33.1
A07p21620 Brassica napus HOM05D005322 ORTHO05D024197 8.4e-22 109.4 140 49.3
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 2.5e-21 107.8 124 46.0
BcaB01g00277 Brassica carinata HOM05D000319 ORTHO05D024197 9.3e-21 105.9 148 48.6
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.2e-20 105.5 197 39.6
BolC6t37311H Brassica oleracea HOM05D005322 ORTHO05D024197 6.1e-20 103.2 74 73.0
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 7.9e-20 102.8 229 36.7
C06p21260 Brassica napus HOM05D005322 ORTHO05D024197 1.5e-18 98.6 74 70.3
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 2.2e-17 94.7 231 36.8
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.0e-15 88.2 266 32.7
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.3e-14 85.5 278 30.9
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 8.5e-14 82.8 361 29.6
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 2.1e-12 78.2 299 26.4
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 3.6e-12 77.4 251 29.1
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 6.7e-11 73.2 230 35.2
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 5.3e-08 63.5 151 36.4


User provided reference genes

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