Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 8.5e-294 1013.1 562 100.0
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 3.3e-245 851.7 563 86.5
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 7.3e-229 797.3 564 82.4
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 1.1e-219 766.9 562 79.2
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.0e-218 762.7 565 78.4
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 6.0e-215 751.1 562 78.1
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.2e-186 657.1 566 71.4
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.5e-181 640.2 590 65.8
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 1.1e-176 624.0 567 69.1
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 1.9e-176 623.2 568 69.4
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 5.5e-168 595.1 567 67.5
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 7.2e-168 594.7 567 68.3
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 7.2e-168 594.7 567 68.3
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 5.6e-136 488.8 606 53.1
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 3.6e-135 486.1 605 56.0
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 4.9e-132 475.7 603 54.7
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 7.3e-112 408.7 597 48.9
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 5.3e-110 402.5 594 49.8
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 1.2e-101 374.8 639 45.7
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 3.8e-92 343.2 589 44.3
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.0e-89 335.1 593 46.0
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 2.1e-87 327.4 587 46.7
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 3.6e-66 256.9 583 39.8
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 2.9e-60 237.3 598 38.0
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 3.2e-59 233.8 593 37.9
BcaC02g07549 Brassica carinata HOM05D003265 ORTHO05D003819 5.5e-59 233.0 580 38.8
BraA04t18315Z Brassica rapa HOM05D003265 ORTHO05D003819 2.4e-54 217.6 586 37.4
A04p28340 Brassica napus HOM05D003265 ORTHO05D003819 4.1e-54 216.9 491 40.7
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 4.5e-53 213.4 594 34.8
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.5e-51 208.4 612 34.5
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 6.1e-50 203.0 642 34.7
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.0e-50 202.6 620 33.7
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 1.0e-49 202.2 588 33.3
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 1.4e-49 201.8 641 34.6
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.4e-49 201.8 529 36.9
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.2e-48 198.7 589 33.6
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 5.7e-48 196.4 622 33.3
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 3.7e-47 193.7 464 36.6
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.4e-46 191.8 576 33.0
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 3.1e-46 190.7 547 36.0
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 2.2e-44 184.5 523 37.1
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.9e-43 181.4 577 37.1
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 1.9e-43 181.4 551 36.1
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 9.5e-43 179.1 589 35.1
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 6.1e-42 176.4 577 33.1
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 6.1e-42 176.4 574 34.1
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 8.0e-42 176.0 590 34.7
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 2.3e-41 174.5 579 35.8
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 5.2e-41 173.3 570 35.3
AL1G31250 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 8.3e-39 166.0 88 94.3
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 2.7e-37 161.0 575 31.1
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 1.0e-36 159.1 629 32.3
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.8e-36 157.1 614 29.6
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 3.8e-36 157.1 548 34.5
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.5e-35 155.2 650 32.0
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 7.3e-35 152.9 529 31.0
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 9.5e-35 152.5 568 33.5
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.8e-34 151.0 661 31.8
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 1.8e-33 148.3 572 30.9
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.3e-33 147.9 586 30.7
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 2.0e-32 144.8 595 30.8
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 4.4e-32 143.7 525 31.4
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.3e-31 142.1 609 31.0
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 1.7e-31 141.7 636 32.2
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.7e-31 141.7 578 32.0
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 6.4e-31 139.8 539 33.2
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.1e-30 139.0 583 32.4
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.1e-30 139.0 507 32.5
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.8e-30 138.3 553 32.2
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 5.4e-30 136.7 501 33.9
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 7.0e-30 136.3 561 31.6
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 7.0e-30 136.3 482 33.4
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 1.2e-29 135.6 211 47.9
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.6e-29 135.2 554 32.1
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 4.6e-29 133.7 515 33.4
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 5.9e-29 133.3 530 32.6
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 1.0e-28 132.5 540 32.2
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 1.3e-28 132.1 541 33.1
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.3e-28 132.1 504 31.3
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 3.0e-28 131.0 556 29.9
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 6.6e-28 129.8 261 38.3
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 4.3e-27 127.1 327 35.5
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 4.3e-27 127.1 671 30.3
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 7.3e-27 126.3 567 31.2
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 7.3e-27 126.3 461 32.1
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 1.2e-26 125.6 628 31.8
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.6e-26 124.0 626 31.5
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.4e-25 122.1 584 30.8
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 1.8e-25 121.7 549 32.2
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 2.3e-25 121.3 590 30.8
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 2.3e-25 121.3 594 29.3
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 4.0e-25 120.6 536 31.0
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 5.2e-25 120.2 556 32.6
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 1.2e-24 119.0 579 30.7
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 2.6e-24 117.9 540 30.2
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 4.4e-24 117.1 585 29.9
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 5.8e-24 116.7 518 29.7
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 1.3e-23 115.5 512 31.4
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 3.7e-23 114.0 531 31.3
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 4.9e-23 113.6 545 32.1
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 8.3e-23 112.8 522 31.0
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.4e-22 112.1 524 30.7
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 1.9e-22 111.7 637 27.8
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 2.4e-22 111.3 574 28.9
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 2.4e-22 111.3 541 29.2
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 3.2e-22 110.9 663 29.0
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 7.0e-22 109.8 645 28.7
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 7.0e-22 109.8 530 30.8
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 1.6e-21 108.6 598 30.4
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 1.6e-21 108.6 545 28.8
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 3.5e-21 107.5 583 29.8
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 3.5e-21 107.5 560 28.9
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 1.0e-20 105.9 560 29.8
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 1.7e-20 105.1 659 27.9
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 5.0e-20 103.6 162 42.0
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 2.5e-19 101.3 449 31.2
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 4.3e-19 100.5 546 29.1
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 7.3e-19 99.8 653 27.0
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 9.5e-19 99.4 549 31.0
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 1.2e-18 99.0 505 29.1
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 1.2e-18 99.0 516 29.3
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 2.8e-18 97.8 531 29.2
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 4.7e-18 97.1 585 30.8
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 1.1e-17 95.9 505 28.9
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 1.1e-17 95.9 576 31.9
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 1.1e-17 95.9 540 29.3
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 6.8e-17 93.2 508 27.2
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 2.0e-16 91.7 612 27.9
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 3.4e-16 90.9 463 30.0
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 4.4e-16 90.5 117 48.7
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 9.8e-16 89.4 575 28.5
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 1.7e-15 88.6 573 29.0
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 1.1e-14 85.9 566 29.5
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.1e-14 84.0 561 28.0
Gohir.D11G344100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.1e-14 84.0 544 27.2
Gorai.007G374500 Gossypium raimondii HOM05D003265 ORTHO05D003819 4.1e-14 84.0 544 27.2
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.4e-14 83.6 437 29.1
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.4e-14 83.6 544 26.7
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.6e-13 82.0 555 27.2
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 7.8e-13 79.7 592 27.5
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 7.8e-13 79.7 489 28.2
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 1.0e-12 79.3 186 35.5
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 1.0e-12 79.3 456 28.5
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 1.7e-12 78.6 404 30.0
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.3e-12 78.2 452 30.1
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 3.0e-12 77.8 100 50.0
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 3.0e-12 77.8 100 50.0
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 3.9e-12 77.4 499 28.5
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 5.1e-12 77.0 594 26.1
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 6.6e-12 76.6 137 35.8
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.6e-12 76.6 560 26.8
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 8.6e-12 76.3 462 28.6
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 1.1e-11 75.9 452 28.3
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 1.5e-11 75.5 579 25.4
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 1.5e-11 75.5 542 27.7
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 2.5e-11 74.7 487 27.7
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 4.3e-11 73.9 504 26.8
Manes.09G080700 Manihot esculenta HOM05D003265 ORTHO05D003819 7.3e-11 73.2 431 31.8
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 1.2e-10 72.4 263 28.9
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.6e-10 72.0 600 27.0
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 2.8e-10 71.2 436 26.4
Ca_11451_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 6.2e-10 70.1 451 32.2
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 8.1e-10 69.7 549 27.7
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 1.1e-09 69.3 474 28.5
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 1.8e-09 68.6 531 27.7
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 2.3e-09 68.2 410 27.8
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.0e-09 67.4 145 35.9
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 6.8e-09 66.6 515 27.6
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 2.6e-08 64.7 533 28.0
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 4.4e-08 63.9 221 29.0
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 5.8e-08 63.5 428 26.4
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.9e-08 62.8 527 28.1
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.9e-08 62.8 135 35.6
CDE09G0374 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 9.9e-08 62.8 275 29.1
FAN10G1642 Fragaria x ananassa HOM05D003265 ORTHO05D003819 9.9e-08 62.8 496 27.6
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 2.9e-07 61.2 145 36.6
TWI38G2066 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.8e-07 60.8 457 24.1
Cfa001593 Carpinus fangiana HOM05D003265 ORTHO05D003819 6.4e-07 60.1 506 26.1
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 6.4e-07 60.1 587 26.9
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 1.1e-06 59.3 461 27.1
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.9e-06 58.5 503 25.4
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 1.9e-06 58.5 307 28.7
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.9e-06 58.5 483 25.9
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.4e-06 58.2 150 35.3
Ciclev10033690m.g Citrus clementina HOM05D003265 ORTHO05D003819 3.2e-06 57.8 463 27.9
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 4.1e-06 57.4 143 34.3
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 5.4e-06 57.0 132 37.1
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 7.1e-06 56.6 151 34.4


User provided reference genes

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