Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.5e-55 218.0 108 100.0
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 5.8e-50 200.7 108 90.7
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 6.4e-49 197.2 108 89.8
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.4e-48 195.3 108 88.0
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.6e-47 192.6 108 88.9
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-45 186.4 109 83.5
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.8e-44 181.8 108 82.4
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 6.2e-44 180.6 108 81.5
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 6.2e-44 180.6 108 84.3
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 4.0e-43 177.9 108 81.5
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 5.3e-43 177.6 108 81.5
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 5.3e-43 177.6 108 80.6
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 5.3e-43 177.6 108 80.6
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 3.4e-42 174.9 108 79.6
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 5.8e-42 174.1 108 78.7
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 7.6e-42 173.7 108 78.7
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 7.6e-42 173.7 108 78.7
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.7e-41 172.6 108 77.8
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 5.7e-37 157.5 108 69.4
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 69.4
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 68.5
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 70.4
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 70.4
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.6e-36 156.0 99 75.8
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 64.8
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 64.8
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 70.4
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 69.4
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 66.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 67.6
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 65.7
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 63.0
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 1.8e-35 152.5 96 78.1
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 63.9
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 63.9
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 64.8
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 63.9
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 66.7
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 3.4e-34 148.3 108 65.7
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 63.0
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 63.0
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 63.9
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 61.1
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 63.9
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 63.0
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 63.0
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 63.0
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.1e-32 143.3 108 64.8
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.1e-32 143.3 108 63.0
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.4e-32 142.9 108 61.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 62.0
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 63.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 60.7
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 63.0
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.2e-31 139.8 108 60.2
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 62.0
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 61.1
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 7.9e-31 137.1 108 60.2
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.0e-30 136.7 87 75.9
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.8e-30 136.0 108 60.2
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.8e-30 136.0 108 63.0
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 1.8e-30 136.0 107 62.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.3e-30 135.6 109 62.4
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 60.2
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 57.4
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.9e-30 134.8 86 77.9
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.9e-30 134.8 86 77.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 3.9e-30 134.8 109 60.6
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 5.1e-30 134.4 105 63.8
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 6.7e-30 134.0 108 61.1
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 6.7e-30 134.0 108 61.1
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 6.7e-30 134.0 108 58.3
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 58.3
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.5e-29 132.9 109 58.7
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.5e-29 132.9 109 59.6
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.9e-29 132.5 109 60.6
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 57.4
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 3.3e-29 131.7 109 57.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 57.4
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 60.2
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 57.4
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 55.6
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 55.6
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 57.4
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 58.3
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.2e-28 129.0 108 54.6
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 2.8e-28 128.6 108 52.8
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 3.7e-28 128.3 108 58.3
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.7e-28 128.3 109 59.6
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.7e-28 128.3 108 55.6
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 3.7e-28 128.3 108 57.4
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 6.3e-28 127.5 109 58.7
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 8.2e-28 127.1 108 56.5
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 8.2e-28 127.1 108 55.6
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 57.4
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 56.5
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.4e-27 126.3 108 55.6
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.4e-27 126.3 108 59.3
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.4e-27 126.3 108 54.6
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 56.5
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 56.5
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 55.6
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 3.1e-27 125.2 107 55.1
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 4.1e-27 124.8 86 70.9
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 4.1e-27 124.8 108 58.3
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 56.5
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 56.5
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 9.1e-27 123.6 108 54.6
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 54.6
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 55.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 53.7
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 2.6e-26 122.1 108 53.7
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.0e-25 120.2 111 56.8
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.2e-25 119.0 86 62.8
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 3.8e-25 118.2 86 66.3
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 8.5e-25 117.1 108 52.8
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 1.1e-24 116.7 87 60.9
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 1.9e-24 115.9 86 66.3
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.9e-24 115.9 108 50.9
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.9e-24 115.9 108 49.1
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 2.5e-24 115.5 108 51.9
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 2.5e-24 115.5 104 51.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.5e-24 115.5 86 65.1
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 9.4e-24 113.6 86 59.3
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 9.4e-24 113.6 91 62.6
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.6e-23 112.8 87 62.1
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 3.6e-23 111.7 100 58.0
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 4.7e-23 111.3 108 50.0
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 4.7e-23 111.3 86 62.8
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 7.9e-23 110.5 86 62.8
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.0e-22 110.2 85 63.5
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.4e-22 109.8 108 50.9
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.0e-22 108.6 85 62.4
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 3.0e-22 108.6 108 49.1
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.6e-21 105.5 108 53.7
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 6.3e-20 100.9 72 61.1
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.1e-19 100.1 86 59.3
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.1e-19 98.2 87 57.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 4.1e-19 98.2 86 54.7
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.2e-18 96.7 87 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 5.0e-17 91.3 110 42.7
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.0e-17 91.3 86 52.3
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 6.5e-17 90.9 106 39.6
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.2e-16 88.2 110 41.8
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 5.5e-16 87.8 108 40.7
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 2.7e-15 85.5 87 49.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 6.1e-15 84.3 66 63.6
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.4e-14 83.2 87 54.0
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.4e-14 83.2 86 52.3
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 3.0e-14 82.0 82 53.7
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 7.4e-13 77.4 112 44.6
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 7.4e-13 77.4 109 39.4
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 9.7e-13 77.0 86 46.5
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 3.7e-12 75.1 58 58.6
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-11 73.2 66 56.1
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.3e-09 66.6 63 47.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 2.2e-09 65.9 112 38.4
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 1.0e-06 57.0 41 61.0


User provided reference genes

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