Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.1e-87 325.9 185 100.0
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 2.1e-68 262.7 185 77.8
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 5.1e-38 161.8 118 72.9
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 2.2e-36 156.4 188 58.0
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 2.0e-34 149.8 124 75.8
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 7.2e-32 141.4 128 70.3
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 7.9e-31 137.9 119 71.4
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.0e-29 133.3 136 65.4
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 5.3e-27 125.2 133 57.1
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 2.0e-26 123.2 122 67.2
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 2.0e-26 123.2 122 67.2
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 4.5e-26 122.1 121 66.9
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 1.3e-25 120.6 195 43.6
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 2.2e-25 119.8 119 66.4
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 2.2e-25 119.8 110 69.1
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 2.2e-25 119.8 119 57.1
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 5.0e-25 118.6 122 64.8
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 8.5e-25 117.9 135 52.6
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 1.5e-24 117.1 116 55.2
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 4.2e-24 115.5 124 53.2
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 7.2e-24 114.8 157 47.1
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 9.4e-24 114.4 123 56.9
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 1.2e-23 114.0 126 55.6
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 1.6e-23 113.6 118 54.2
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.1e-23 113.2 210 45.2
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 3.6e-23 112.5 112 57.1
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 3.6e-23 112.5 197 47.2
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 3.6e-23 112.5 117 60.7
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 8.0e-23 111.3 122 52.5
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 1.4e-22 110.5 158 45.6
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.4e-22 110.5 122 52.5
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 1.4e-22 110.5 131 50.4
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 2.3e-22 109.8 120 50.8
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 2.3e-22 109.8 117 68.4
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.3e-22 109.8 158 46.2
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 2.3e-22 109.8 125 52.0
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 3.0e-22 109.4 119 51.3
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 6.7e-22 108.2 122 60.7
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 8.8e-22 107.8 123 51.2
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 8.8e-22 107.8 120 62.5
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 8.8e-22 107.8 120 62.5
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 8.8e-22 107.8 120 62.5
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 8.8e-22 107.8 122 51.6
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 8.8e-22 107.8 124 54.8
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 1.2e-21 107.5 122 50.8
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.2e-21 107.5 131 50.4
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.5e-21 107.1 158 44.9
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.5e-21 107.1 121 59.5
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 1.5e-21 107.1 111 55.0
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 2.0e-21 106.7 120 50.0
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.6e-21 106.3 105 67.6
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 2.6e-21 106.3 119 49.6
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 2.6e-21 106.3 136 48.5
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 3.3e-21 105.9 127 48.8
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 3.3e-21 105.9 118 51.7
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 3.3e-21 105.9 117 53.0
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 5.7e-21 105.1 125 47.2
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 7.5e-21 104.8 135 48.1
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 9.7e-21 104.4 117 47.9
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 9.7e-21 104.4 111 55.0
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.3e-20 104.0 117 48.7
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 1.7e-20 103.6 118 49.2
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 1.7e-20 103.6 115 52.2
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 1.7e-20 103.6 121 48.8
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 2.2e-20 103.2 124 48.4
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 4.8e-20 102.1 130 49.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 6.3e-20 101.7 118 51.7
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 8.2e-20 101.3 125 51.2
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.8e-19 100.1 119 52.9
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.8e-19 100.1 115 50.4
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 2.4e-19 99.8 116 50.0
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 3.1e-19 99.4 117 48.7
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 3.1e-19 99.4 125 48.0
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.1e-19 99.0 109 52.3
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 5.3e-19 98.6 118 52.5
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.3e-19 98.6 137 46.7
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 5.3e-19 98.6 123 48.0
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 1.2e-18 97.4 133 50.4
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 1.2e-18 97.4 119 52.1
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 1.2e-18 97.4 129 46.5
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 2.0e-18 96.7 109 51.4
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 2.0e-18 96.7 175 41.1
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 2.7e-18 96.3 119 46.2
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.5e-18 95.9 116 48.3
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.9e-18 95.1 117 48.7
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 5.9e-18 95.1 121 44.6
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 5.9e-18 95.1 109 49.5
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 7.7e-18 94.7 121 50.4
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 7.7e-18 94.7 119 51.3
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.3e-17 94.0 113 51.3
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.7e-17 93.6 120 47.5
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 3.8e-17 92.4 116 50.0
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 1.9e-16 90.1 121 47.9
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.9e-16 90.1 118 47.5
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 3.2e-16 89.4 105 49.5
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 2.7e-15 86.3 76 60.5
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 3.6e-15 85.9 76 60.5
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 2.3e-14 83.2 105 45.7
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 3.0e-14 82.8 73 63.0
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.2e-14 82.0 68 60.3
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.2e-14 82.0 68 60.3
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 8.8e-14 81.3 124 44.4
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 2.6e-13 79.7 75 56.0
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 7.5e-13 78.2 84 53.6
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 7.5e-13 78.2 105 44.8
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 2.2e-12 76.6 154 31.8
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 4.8e-12 75.5 112 43.8
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 6.3e-12 75.1 116 40.5
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 1.4e-11 73.9 77 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 5.0e-09 65.5 171 36.3
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 1.1e-08 64.3 202 30.7
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 1.5e-08 63.9 45 71.1
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 4.2e-08 62.4 37 81.1
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 1.8e-06 57.0 29 89.7


User provided reference genes

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