Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 2.8e-105 385.6 238 100.0
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 5.5e-101 371.3 238 93.7
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 6.1e-100 367.9 238 91.6
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.5e-98 363.2 182 98.9
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 4.8e-97 358.2 238 94.1
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 5.3e-96 354.8 190 92.1
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 4.4e-90 335.1 190 86.8
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 4.4e-90 335.1 190 86.8
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 2.8e-89 332.4 191 85.9
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 2.8e-89 332.4 191 85.9
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 4.0e-83 312.0 276 73.6
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 8.6e-70 267.7 187 71.1
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 3.3e-69 265.8 188 68.6
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 4.2e-69 265.4 187 69.5
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 5.5e-69 265.0 187 69.0
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 9.5e-69 264.2 193 70.5
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 4.0e-67 258.8 190 67.9
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 6.8e-67 258.1 159 79.2
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 1.2e-66 257.3 191 69.6
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.0e-66 256.5 183 71.6
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.3e-65 253.8 188 68.1
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.1e-64 250.8 189 66.1
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 7.0e-64 248.1 165 73.9
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.6e-63 246.9 188 65.4
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 2.7e-63 246.1 197 69.0
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 5.9e-63 245.0 162 74.1
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 7.8e-63 244.6 184 66.3
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 2.3e-62 243.0 184 69.0
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 3.8e-62 242.3 173 69.4
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 5.0e-62 241.9 145 78.6
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 5.0e-62 241.9 178 68.5
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 5.0e-62 241.9 195 65.1
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 6.6e-62 241.5 183 67.2
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 8.6e-62 241.1 178 66.9
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 8.6e-62 241.1 195 62.6
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.1e-61 240.7 172 68.6
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 1.1e-61 240.7 150 77.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.5e-61 240.4 178 68.0
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.9e-61 240.0 182 63.7
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.5e-61 239.6 183 65.0
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 3.3e-61 239.2 153 73.9
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 5.6e-61 238.4 158 72.2
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 5.6e-61 238.4 158 72.2
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 5.6e-61 238.4 181 66.3
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 5.6e-61 238.4 181 66.3
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 1.2e-60 237.3 174 66.7
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.2e-60 237.3 170 68.2
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.2e-60 237.3 188 64.4
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.2e-60 237.3 146 77.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.2e-60 237.3 141 78.7
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.2e-60 237.3 182 65.4
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 1.2e-60 237.3 177 66.1
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.2e-60 237.3 144 75.7
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 1.6e-60 236.9 158 73.4
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 2.1e-60 236.5 144 76.4
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.8e-60 236.1 181 65.2
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.6e-60 235.7 192 62.0
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 6.1e-60 235.0 184 64.1
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.0e-59 234.2 183 63.9
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.0e-59 234.2 185 63.8
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 1.4e-59 233.8 195 62.1
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.4e-59 233.8 145 75.9
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 4.0e-59 232.3 176 67.6
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 4.0e-59 232.3 149 76.5
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 4.0e-59 232.3 189 63.5
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 5.2e-59 231.9 154 72.7
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 8.9e-59 231.1 176 64.2
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 1.5e-58 230.3 185 63.2
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 2.6e-58 229.6 175 66.3
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 7.5e-58 228.0 149 75.2
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 9.8e-58 227.6 192 63.0
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 1.3e-57 227.3 150 75.3
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 2.2e-57 226.5 184 63.6
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 8.3e-57 224.6 134 79.1
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 4.1e-56 222.2 194 60.3
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 5.4e-56 221.9 151 70.9
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 7.0e-56 221.5 251 51.0
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 1.2e-55 220.7 170 64.1
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 1.2e-55 220.7 188 60.6
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.5e-55 219.2 130 80.8
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.0e-54 217.6 186 61.8
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.3e-54 217.2 144 73.6
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 8.6e-54 214.5 132 77.3
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 1.9e-53 213.4 181 61.3
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.9e-53 213.4 184 60.9
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 2.5e-53 213.0 159 67.9
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 2.5e-53 213.0 171 64.9
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 4.3e-53 212.2 138 72.5
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 1.1e-51 207.6 190 58.9
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 5.2e-51 205.3 136 72.1
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 3.1e-43 179.5 153 61.4
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 4.4e-42 175.6 136 60.3
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 8.3e-41 171.4 171 54.4
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.6e-39 167.2 188 53.2
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 5.1e-38 162.2 91 81.3
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 1.1e-37 161.0 191 45.5
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.1e-35 154.5 101 75.2
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 4.0e-35 152.5 151 56.3
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 8.9e-35 151.4 140 60.0
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 9.9e-34 147.9 178 48.9
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 2.5e-29 133.3 126 66.7
BraA04t16410Z Brassica rapa HOM05D006601 ORTHO05D008281 3.6e-28 129.4 126 63.5
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 1.4e-27 127.5 128 57.8
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 1.4e-27 127.5 128 57.8
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 2.0e-26 123.6 147 47.6
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 2.6e-26 123.2 131 51.1
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 9.6e-21 104.8 159 65.4
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 9.9e-18 94.7 80 63.8
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.7e-17 94.0 124 44.4
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 6.4e-17 92.0 90 57.8
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 1.1e-16 91.3 111 52.3
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 6.2e-12 75.5 55 67.3
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 2.9e-09 66.6 37 86.5
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 2.5e-08 63.5 87 44.8
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 5.5e-08 62.4 31 77.4
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 4.6e-07 59.3 31 74.2


User provided reference genes

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