Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 4.0e-50 201.4 125 100.0
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.9e-45 185.3 125 88.8
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.9e-44 182.6 124 82.3
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 4.2e-44 181.4 124 81.5
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 5.5e-44 181.0 124 86.3
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 5.5e-44 181.0 125 76.8
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 4.7e-43 177.9 119 84.9
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 6.1e-43 177.6 125 84.8
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 1.4e-42 176.4 125 84.0
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 2.3e-42 175.6 125 80.8
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 3.0e-42 175.3 126 80.2
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 5.2e-42 174.5 125 84.0
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 5.2e-42 174.5 125 84.0
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 5.2e-42 174.5 125 84.0
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 1.2e-41 173.3 83 97.6
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 5.7e-41 171.0 124 78.2
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 5.7e-41 171.0 124 78.2
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 1.3e-40 169.9 82 95.1
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 2.8e-40 168.7 83 94.0
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 4.5e-38 161.4 82 90.2
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.1e-31 140.2 83 71.1
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 1.8e-31 139.4 79 74.7
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.8e-31 139.4 83 71.1
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 1.8e-31 139.4 83 72.3
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.4e-31 139.0 79 74.7
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 1.2e-30 136.7 79 72.2
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.2e-30 136.7 76 73.7
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 1.2e-30 136.7 79 73.4
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 1.2e-30 136.7 79 73.4
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 3.5e-30 135.2 83 68.7
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 4.5e-30 134.8 79 70.9
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 4.5e-30 134.8 76 73.7
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 1.0e-29 133.7 77 71.4
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 1.0e-29 133.7 76 72.4
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 1.3e-29 133.3 77 72.7
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 1.3e-29 133.3 79 69.6
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 1.7e-29 132.9 77 71.4
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 1.7e-29 132.9 76 73.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.3e-29 132.5 75 73.3
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 2.3e-29 132.5 75 73.3
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 2.9e-29 132.1 77 71.4
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 2.9e-29 132.1 77 70.1
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 3.8e-29 131.7 79 67.1
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 5.0e-29 131.3 77 70.1
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 6.6e-29 131.0 74 74.3
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 6.6e-29 131.0 74 73.0
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 1.1e-28 130.2 74 74.3
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 1.1e-28 130.2 77 70.1
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 1.1e-28 130.2 74 74.3
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 1.5e-28 129.8 75 72.0
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 1.5e-28 129.8 77 70.1
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 1.5e-28 129.8 77 71.4
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.5e-28 129.8 77 71.4
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.5e-28 129.8 76 69.7
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 1.9e-28 129.4 75 73.3
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 1.9e-28 129.4 79 67.1
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.9e-28 129.4 79 70.9
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 1.9e-28 129.4 78 70.5
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 1.9e-28 129.4 76 69.7
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 2.5e-28 129.0 78 67.9
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 3.3e-28 128.6 74 73.0
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 5.6e-28 127.9 79 69.6
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 5.6e-28 127.9 79 69.6
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 5.6e-28 127.9 77 68.8
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 7.3e-28 127.5 73 74.0
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 7.3e-28 127.5 125 50.4
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 1.2e-27 126.7 77 66.2
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 1.2e-27 126.7 77 68.8
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 1.6e-27 126.3 79 68.4
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 2.1e-27 125.9 74 73.0
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 2.8e-27 125.6 76 67.1
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 2.8e-27 125.6 79 64.6
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 3.6e-27 125.2 74 68.9
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 3.6e-27 125.2 123 51.2
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 8.0e-27 124.0 75 69.3
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 1.0e-26 123.6 75 70.7
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 1.0e-26 123.6 73 71.2
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 1.0e-26 123.6 71 74.6
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.8e-26 122.9 79 63.3
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 1.8e-26 122.9 75 65.3
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 3.0e-26 122.1 76 68.4
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 3.0e-26 122.1 74 68.9
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 3.0e-26 122.1 75 65.3
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 3.0e-26 122.1 74 66.2
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 4.0e-26 121.7 74 68.9
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.0e-26 121.7 73 68.5
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 6.8e-26 120.9 74 66.2
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 8.9e-26 120.6 74 68.9
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 1.5e-25 119.8 75 66.7
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 3.4e-25 118.6 74 68.9
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 3.4e-25 118.6 74 64.9
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 4.4e-25 118.2 75 64.0
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 4.4e-25 118.2 74 64.9
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 4.4e-25 118.2 75 69.3
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 5.8e-25 117.9 75 62.7
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 5.8e-25 117.9 75 62.7
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 5.8e-25 117.9 75 62.7
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 5.8e-25 117.9 75 62.7
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 5.8e-25 117.9 75 68.0
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 2.9e-24 115.5 66 75.8
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 2.9e-24 115.5 73 64.4
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 8.3e-24 114.0 76 64.5
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 8.3e-24 114.0 75 60.0
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 8.3e-24 114.0 75 60.0
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 8.3e-24 114.0 75 60.0
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 8.3e-24 114.0 74 63.5
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 1.1e-23 113.6 75 61.3
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 7.0e-23 110.9 75 58.7
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 7.0e-23 110.9 75 58.7
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 3.9e-21 105.1 74 56.8
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 4.3e-20 101.7 74 54.1
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 5.6e-20 101.3 74 51.4
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 3.6e-19 98.6 59 67.8
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 8.0e-19 97.4 74 51.4
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 1.8e-18 96.3 54 77.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 6.8e-18 94.4 66 60.6
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 6.8e-18 94.4 66 60.6
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 5.8e-17 91.3 60 60.0
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 1.4e-15 86.7 74 50.0
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 6.6e-13 77.8 70 51.4
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 2.6e-09 65.9 78 42.3
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 3.4e-09 65.5 78 42.3
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 4.4e-09 65.1 78 43.6
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 5.8e-09 64.7 78 42.3
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 9.9e-09 63.9 68 44.1
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-08 63.5 78 41.0
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 1.7e-08 63.2 66 43.9
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 8.3e-08 60.8 70 44.3
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 2.4e-07 59.3 69 37.7
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 4.1e-07 58.5 68 44.1
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 4.1e-07 58.5 68 36.8
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 4.1e-07 58.5 65 38.5
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 5.4e-07 58.2 70 40.0
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 7.1e-07 57.8 65 38.5
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 1.2e-06 57.0 65 38.5
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 1.6e-06 56.6 63 42.9
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 1.6e-06 56.6 68 41.2
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 2.1e-06 56.2 64 43.8
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.7e-06 55.8 63 42.9
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 3.5e-06 55.5 60 43.3
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 4.6e-06 55.1 66 42.4
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 6.0e-06 54.7 58 44.8
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 7.8e-06 54.3 64 42.2


User provided reference genes

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