Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 3.3e-33 144.4 72 100.0
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.2e-30 136.0 68 98.5
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 3.4e-30 134.4 72 95.8
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 4.5e-30 134.0 67 97.0
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 4.5e-30 134.0 68 95.6
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 5.8e-30 133.7 72 95.8
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 2.2e-29 131.7 67 94.0
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-28 129.0 65 96.9
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 7.1e-28 126.7 65 93.8
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.2e-27 125.9 65 93.8
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.2e-27 125.9 65 93.8
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.2e-27 125.9 65 93.8
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.5e-27 124.4 62 95.2
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 4.6e-27 124.0 66 89.4
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 7.9e-27 123.2 64 90.6
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 7.9e-27 123.2 64 90.6
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-23 112.5 67 80.6
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 5.3e-23 110.5 65 81.5
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 5.3e-23 110.5 65 81.5
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.5e-22 109.0 65 80.0
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.5e-22 109.0 65 80.0
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.5e-22 109.0 65 80.0
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.6e-19 99.0 60 76.7
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.6e-19 99.0 60 76.7
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 2.1e-19 98.6 66 68.2
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.0e-18 96.3 60 76.7
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 3.0e-18 94.7 66 66.7
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.9e-18 94.4 60 73.3
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 6.7e-18 93.6 66 65.2
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.9e-17 92.0 66 63.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 5.7e-17 90.5 66 66.7
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 7.4e-17 90.1 66 62.1
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.7e-17 89.7 65 60.0
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 9.7e-17 89.7 66 63.6
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.6e-16 89.0 65 61.5
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.6e-16 89.0 66 62.1
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 2.2e-16 88.6 66 59.1
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.2e-16 88.6 65 61.5
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.7e-16 87.8 66 65.2
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 4.8e-16 87.4 65 70.8
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 4.8e-16 87.4 65 61.5
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.3e-16 87.0 65 58.5
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 6.3e-16 87.0 66 60.6
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 8.2e-16 86.7 66 59.1
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 8.2e-16 86.7 66 63.6
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 8.2e-16 86.7 66 65.2
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.1e-15 86.3 65 60.0
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.1e-15 86.3 65 60.0
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 2.4e-15 85.1 65 56.9
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 2.4e-15 85.1 65 56.9
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 3.1e-15 84.7 64 59.4
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.1e-15 84.3 57 66.7
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 4.1e-15 84.3 64 59.4
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 5.3e-15 84.0 60 65.0
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 6.9e-15 83.6 60 58.3
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 6.9e-15 83.6 60 58.3
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 66 59.1
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 66 59.1
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.5e-14 82.4 59 62.7
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.0e-14 82.0 65 53.8
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.0e-14 82.0 64 59.4
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.0e-14 82.0 66 56.1
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.6e-14 81.6 60 61.7
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.6e-14 81.6 65 53.8
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.6e-14 81.6 65 53.8
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.4e-14 81.3 66 57.6
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.5e-14 80.9 66 59.1
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.7e-13 79.0 57 59.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.7e-13 79.0 65 53.8
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.2e-13 78.6 66 54.5
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.2e-13 78.6 66 54.5
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 2.2e-13 78.6 65 53.8
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 5.0e-13 77.4 64 56.2
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.5e-13 77.0 66 54.5
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.5e-13 77.0 65 56.9
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-12 76.3 66 54.5
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.1e-12 76.3 58 63.8
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.9e-12 75.5 66 51.5
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.9e-12 75.5 66 53.0
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.9e-12 75.5 66 53.0
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.2e-12 74.7 66 51.5
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 3.2e-12 74.7 66 54.5
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 4.2e-12 74.3 66 54.5
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 5.5e-12 73.9 65 52.3
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 7.2e-12 73.6 65 52.3
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 7.2e-12 73.6 64 53.1
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 7.2e-12 73.6 65 52.3
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 7.2e-12 73.6 66 54.5
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 9.4e-12 73.2 66 57.6
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.4e-12 73.2 60 60.0
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.4e-12 73.2 60 60.0
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.2e-11 72.8 58 58.6
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.2e-11 72.8 66 50.0
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 1.2e-11 72.8 66 51.5
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 2.1e-11 72.0 61 57.4
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 2.1e-11 72.0 61 57.4
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.1e-11 72.0 65 52.3
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.1e-11 72.0 60 56.7
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.1e-11 72.0 60 56.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.1e-11 72.0 66 51.5
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.7e-11 71.6 65 52.3
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 2.7e-11 71.6 66 54.5
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 3.6e-11 71.2 66 50.0
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.6e-11 70.9 66 51.5
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.6e-11 70.9 66 51.5
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 4.6e-11 70.9 57 57.9
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 4.6e-11 70.9 66 50.0
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.4e-10 69.3 61 54.1
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.4e-10 69.3 61 52.5
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.3e-10 68.6 70 51.4
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 2.3e-10 68.6 66 51.5
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.0e-10 68.2 66 50.0
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.0e-10 68.2 62 51.6
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.0e-10 68.2 65 50.8
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.0e-10 68.2 64 50.0
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 3.9e-10 67.8 58 60.3
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.9e-10 67.8 63 55.6
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 6.7e-10 67.0 49 59.2
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.1e-09 66.2 65 50.8
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 2.0e-09 65.5 66 48.5
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.5e-09 65.1 64 53.1
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.5e-09 65.1 64 53.1
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 2.5e-09 65.1 58 51.7
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.5e-09 65.1 58 51.7
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.3e-09 64.7 57 54.4
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.3e-09 64.3 59 49.2
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.3e-09 64.3 66 47.0
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.7e-09 63.9 56 55.4
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.7e-09 63.9 56 55.4
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 5.7e-09 63.9 57 56.1
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 5.7e-09 63.9 57 56.1
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 7.4e-09 63.5 58 53.4
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 9.7e-09 63.2 57 50.9
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.3e-08 62.8 58 53.4
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 1.3e-08 62.8 66 47.0
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 2.8e-08 61.6 57 52.6
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.8e-08 61.6 59 50.8
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 4.8e-08 60.8 51 51.0
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.3e-08 60.5 64 50.0
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 8.2e-08 60.1 62 46.8
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 8.2e-08 60.1 62 46.8
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 8.2e-08 60.1 57 50.9
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.1e-07 59.7 62 50.0
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.1e-07 59.7 51 52.9
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.1e-07 59.7 58 53.4
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.4e-07 59.3 65 47.7
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.4e-07 59.3 59 49.2
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 1.4e-07 59.3 58 53.4
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 1.8e-07 58.9 65 46.2
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 2.4e-07 58.5 58 48.3
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 2.4e-07 58.5 58 53.4
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.1e-07 57.8 65 44.6
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 5.3e-07 57.4 58 51.7
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.9e-07 57.0 65 47.7
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 6.9e-07 57.0 38 71.1
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 6.9e-07 57.0 58 51.7
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 9.1e-07 56.6 58 53.4
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.2e-06 56.2 63 52.4
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.5e-06 55.8 53 52.8
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 1.5e-06 55.8 58 51.7
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 2.0e-06 55.5 64 48.4
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 2.6e-06 55.1 58 50.0
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.4e-06 54.7 55 50.9
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 5.9e-06 53.9 59 44.1


User provided reference genes

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