Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 2.0e-136 489.2 258 100.0
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 1.6e-130 469.5 259 96.9
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 2.4e-126 455.7 265 90.9
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 4.2e-123 444.9 257 92.2
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 6.1e-122 441.0 257 91.1
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 5.0e-116 421.4 256 88.3
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 5.0e-116 421.4 256 88.3
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 2.5e-115 419.1 251 88.8
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 2.5e-115 419.1 251 88.8
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 7.2e-115 417.5 252 87.3
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.8e-114 415.6 251 88.4
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 8.6e-108 394.0 246 83.7
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 5.8e-104 381.3 256 78.1
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 2.3e-92 342.8 244 71.7
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 3.3e-91 339.0 247 74.1
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 1.8e-89 333.2 243 71.6
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 1.3e-87 327.0 249 69.5
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.9e-86 323.2 264 68.6
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.4e-86 322.8 265 69.1
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 2.4e-86 322.8 246 67.9
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 3.2e-86 322.4 245 70.2
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 5.4e-86 321.6 245 67.8
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 7.1e-86 321.2 257 67.7
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 4.6e-85 318.5 252 65.9
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.6e-85 318.5 267 68.2
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 6.0e-85 318.2 256 68.0
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 7.8e-85 317.8 243 69.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 1.0e-84 317.4 245 69.0
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.7e-84 316.6 267 67.0
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 2.3e-84 316.2 244 67.2
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 3.9e-84 315.5 264 67.4
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 5.1e-84 315.1 251 66.1
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 1.5e-83 313.5 260 65.8
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 1.9e-83 313.2 257 65.0
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 3.3e-83 312.4 244 68.0
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 7.3e-83 311.2 269 65.1
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 7.3e-83 311.2 246 67.9
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.6e-82 310.1 248 67.3
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.6e-82 310.1 248 67.3
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 2.1e-82 309.7 244 68.0
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 2.4e-81 306.2 192 77.1
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 2.4e-81 306.2 269 62.5
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.0e-81 305.4 257 65.8
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 4.0e-81 305.4 190 80.5
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.2e-80 303.9 258 64.3
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 1.5e-80 303.5 269 63.2
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 2.0e-80 303.1 248 66.5
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 2.0e-80 303.1 203 75.9
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.0e-80 303.1 258 64.0
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 2.6e-80 302.8 216 70.4
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 3.4e-80 302.4 253 65.2
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 4.4e-80 302.0 263 63.5
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 1.3e-79 300.4 253 64.4
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.7e-79 300.1 263 63.1
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.7e-79 300.1 253 63.6
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 2.9e-79 299.3 252 65.9
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 4.9e-79 298.5 192 77.1
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 8.4e-79 297.7 201 75.6
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.9e-78 296.6 205 69.8
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.9e-78 296.6 252 65.1
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 4.2e-78 295.4 261 61.3
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 4.2e-78 295.4 262 62.6
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.2e-77 293.9 260 62.3
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.2e-77 293.9 256 65.2
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.7e-77 292.7 247 62.8
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 1.0e-76 290.8 217 68.2
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 1.7e-76 290.0 255 63.9
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 5.1e-76 288.5 252 61.9
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.5e-75 286.2 250 62.8
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 3.3e-75 285.8 232 65.9
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 7.3e-75 284.6 261 61.7
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 7.3e-75 284.6 241 64.3
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 9.6e-75 284.3 247 60.7
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 9.6e-75 284.3 247 60.7
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 2.8e-74 282.7 246 63.4
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 6.9e-73 278.1 240 61.7
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 9.0e-73 277.7 254 60.2
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.2e-72 277.3 260 58.5
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 3.8e-71 272.3 236 60.6
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.9e-70 270.0 246 63.0
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 2.1e-69 266.5 203 66.5
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.1e-69 266.5 197 70.6
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 3.5e-69 265.8 207 67.1
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 6.0e-69 265.0 197 70.6
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 1.0e-68 264.2 181 72.9
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.0e-68 264.2 262 57.3
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.3e-68 263.1 255 58.0
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 3.0e-68 262.7 252 58.3
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 3.0e-68 262.7 197 69.5
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 3.9e-68 262.3 262 57.3
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.5e-67 260.4 198 69.7
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 3.3e-67 259.2 248 58.1
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 3.3e-67 259.2 246 59.3
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 3.3e-67 259.2 213 64.8
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.3e-66 257.3 212 65.1
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 6.2e-66 255.0 276 53.3
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 6.2e-66 255.0 184 67.4
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 8.1e-66 254.6 163 79.1
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.4e-65 253.8 249 55.0
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 4.0e-65 252.3 230 57.0
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 9.0e-65 251.1 245 57.6
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.3e-63 247.3 243 56.0
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 4.9e-63 245.4 256 57.0
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 1.4e-62 243.8 224 60.7
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 5.5e-62 241.9 272 54.4
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 2.3e-60 236.5 127 96.1
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.2e-56 224.2 201 60.7
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 3.2e-54 216.1 174 59.2
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.7e-53 213.0 150 72.0
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.5e-53 212.6 282 44.7
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.5e-53 212.6 269 50.2
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 9.0e-49 198.0 180 60.6
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.5e-30 136.7 98 69.4
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 2.9e-23 113.2 95 63.2
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 4.0e-20 102.8 112 50.9
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-18 95.5 129 41.9
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.5e-16 89.7 71 60.6
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-16 89.4 104 39.4
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 4.1e-09 66.2 53 60.4
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 9.1e-09 65.1 48 66.7
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 2.9e-07 60.1 68 47.1
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.8e-07 59.7 38 63.2


User provided reference genes

Program Settings