Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 5.0e-208 727.6 382 100.0
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 7.2e-183 644.0 382 89.0
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.1e-150 536.2 382 78.8
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 3.6e-142 508.8 384 76.0
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.1e-135 487.3 385 73.8
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 6.9e-125 451.4 385 69.4
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 2.4e-117 426.4 341 71.6
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 4.3e-111 405.6 366 68.0
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 3.7e-110 402.5 377 67.1
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.0e-107 394.4 388 63.1
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 2.3e-104 383.3 355 66.2
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 7.6e-100 368.2 385 56.9
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 2.6e-92 343.2 410 56.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.0e-47 194.1 222 54.1
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.6e-44 184.5 396 37.6
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.0e-44 184.1 396 37.6
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 4.3e-42 176.4 315 40.3
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.3e-42 175.6 398 36.2
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.1e-40 170.2 427 39.3
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-39 167.5 383 36.8
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.2e-38 164.1 288 41.3
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 8.3e-38 162.2 226 45.6
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-37 161.8 270 42.2
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-37 161.8 270 42.2
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-37 161.8 270 42.2
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.4e-37 161.4 239 41.0
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 3.2e-37 160.2 401 36.9
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 7.0e-37 159.1 236 45.3
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-36 157.5 389 36.2
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.6e-36 156.4 270 40.4
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.0e-35 155.2 388 36.3
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.7e-35 154.5 406 36.0
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.7e-35 154.5 406 36.2
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.3e-35 154.1 225 44.9
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.9e-35 153.3 186 51.6
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.5e-34 151.4 247 44.1
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 1.9e-34 151.0 242 44.2
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.3e-34 150.2 358 36.6
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 5.6e-34 149.4 227 44.9
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 7.3e-34 149.1 388 34.8
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.2e-33 148.3 292 40.1
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.7e-33 146.4 426 34.0
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 4.7e-33 146.4 226 40.7
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.2e-33 146.0 306 36.3
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.1e-32 145.2 278 38.1
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.4e-32 144.8 206 44.7
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.8e-32 144.4 273 41.4
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.1e-32 143.7 223 44.4
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 5.2e-32 142.9 332 39.2
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.2e-31 141.7 293 36.9
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.0e-31 141.0 397 33.5
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 3.4e-31 140.2 181 48.1
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.8e-31 139.4 240 44.2
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 7.5e-31 139.0 263 39.2
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 2.9e-30 137.1 191 44.0
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.9e-30 136.3 207 45.4
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 4.9e-30 136.3 255 40.0
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.4e-29 134.8 394 34.0
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.9e-29 134.4 394 33.0
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 2.4e-29 134.0 234 40.6
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.4e-29 134.0 257 40.5
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 9.2e-29 132.1 398 34.4
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 2.1e-28 131.0 190 45.8
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 3.5e-28 130.2 386 33.7
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 4.6e-28 129.8 256 37.9
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 6.0e-28 129.4 220 40.5
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.0e-27 128.6 258 39.5
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 3.9e-27 126.7 326 34.0
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 6.6e-27 125.9 334 32.9
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 8.6e-27 125.6 261 39.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 3.3e-26 123.6 311 35.0
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 4.3e-26 123.2 235 37.4
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.2e-25 121.7 420 28.6
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.2e-25 121.7 138 55.8
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.6e-25 121.3 282 38.7
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 2.1e-25 120.9 275 36.4
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 3.6e-25 120.2 255 32.2
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 2.3e-24 117.5 219 33.3
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 2.3e-24 117.5 195 39.0
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.1e-24 117.1 321 33.6
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 4.0e-24 116.7 184 42.9
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 5.2e-24 116.3 352 31.0
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 6.8e-24 115.9 217 33.2
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 8.9e-24 115.5 327 31.8
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 8.9e-24 115.5 286 35.7
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.2e-23 115.2 188 44.7
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 2.0e-23 114.4 396 32.1
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 9.9e-23 112.1 205 41.5
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.1e-21 108.6 226 31.4
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.9e-21 107.8 261 35.2
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 2.4e-21 107.5 241 33.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 3.2e-21 107.1 448 27.9
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 5.4e-21 106.3 408 30.6
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 5.4e-21 106.3 408 30.9
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 2.1e-20 104.4 280 32.9
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 4.6e-20 103.2 391 31.5
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.0e-20 102.8 207 40.1
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 7.8e-20 102.4 295 29.5
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 3.0e-19 100.5 143 44.1
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 3.0e-19 100.5 245 36.7
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 6.6e-19 99.4 204 35.8
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.1e-18 98.6 208 37.0
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.5e-18 98.2 214 34.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.9e-18 97.8 292 35.3
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.9e-18 97.8 205 32.2
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 2.5e-18 97.4 149 48.3
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.3e-18 96.7 194 39.7
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 4.3e-18 96.7 228 35.1
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 7.3e-18 95.9 401 29.2
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.6e-17 94.7 214 34.1
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 4.7e-17 93.2 209 36.4
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 6.2e-17 92.8 379 29.6
C01p29000 Brassica napus HOM05D003589 ORTHO05D005170 1.1e-16 92.0 111 53.2
BolC1t02831H Brassica oleracea HOM05D003589 ORTHO05D005170 1.1e-16 92.0 111 53.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 1.1e-16 92.0 124 46.0
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 1.8e-16 91.3 219 32.4
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 3.1e-16 90.5 230 33.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 2.0e-15 87.8 273 32.2
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 2.6e-15 87.4 145 43.4
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.6e-15 87.4 177 32.2
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.9e-14 84.0 269 32.3
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 4.9e-14 83.2 199 35.2
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 8.4e-14 82.4 111 47.7
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.2e-13 80.5 200 34.5
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.2e-13 80.5 201 29.9
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 4.2e-13 80.1 116 44.0
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 5.4e-13 79.7 179 31.8
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 9.3e-13 79.0 324 27.8
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.5e-12 77.0 181 35.4
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.0e-11 75.5 187 36.9
A01p23360 Brassica napus HOM05D003589 ORTHO05D005170 3.9e-11 73.6 106 52.8
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 3.9e-11 73.6 178 30.3
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 3.3e-10 70.5 173 33.5
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 2.8e-09 67.4 185 30.8
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.8e-09 67.4 229 31.0
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.2e-06 57.8 358 27.1
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 3.8e-06 57.0 291 27.1


User provided reference genes

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