Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G30840 Arabidopsis lyrata HOM05D007518 ORTHO05D008168 2.9e-58 228.8 159 100.0
AT3G50685 Arabidopsis thaliana HOM05D007518 ORTHO05D008168 1.7e-53 213.0 159 93.7
Thhalv10010782m.g Eutrema salsugineum HOM05D007518 ORTHO05D008168 2.3e-50 202.6 159 91.2
Carub.0005s1701 Capsella rubella HOM05D007518 ORTHO05D008168 9.5e-49 197.2 160 89.4
C05p06340 Brassica napus HOM05D007518 ORTHO05D008168 8.0e-48 194.1 159 87.4
BolC5t29390H Brassica oleracea HOM05D007518 ORTHO05D008168 1.0e-47 193.7 159 87.4
A06p05270 Brassica napus HOM05D007518 ORTHO05D008168 5.2e-47 191.4 159 86.2
BraA06t23735Z Brassica rapa HOM05D007518 ORTHO05D008168 5.2e-47 191.4 159 86.2
CARHR160200 Cardamine hirsuta HOM05D007518 ORTHO05D008168 6.8e-47 191.0 159 89.3
Sp5g11540 Schrenkiella parvula HOM05D007518 ORTHO05D008168 2.9e-45 185.7 159 86.2
Aa31LG4G18840 Aethionema arabicum HOM05D007518 ORTHO05D008168 6.0e-43 177.9 159 84.3
BcaB07g34066 Brassica carinata HOM05D007518 ORTHO05D008168 2.1e-40 169.5 157 70.1
THA.LOC104821280 Tarenaya hassleriana HOM05D007518 ORTHO05D008168 3.6e-40 168.7 159 79.2
arahy.Tifrunner.gnm1.ann1.5UMV3I Arachis hypogaea HOM05D007518 ORTHO05D008168 5.1e-34 148.3 164 74.4
arahy.Tifrunner.gnm1.ann1.RRU65L Arachis hypogaea HOM05D007518 ORTHO05D008168 5.1e-34 148.3 164 73.8
Sabra07G0023900 Salix brachista HOM05D007518 ORTHO05D008168 5.1e-34 148.3 164 76.2
MD15G1264900 Malus domestica HOM05D007518 ORTHO05D008168 6.6e-34 147.9 168 72.6
Glyma.11G067100 Glycine max HOM05D007518 ORTHO05D008168 8.6e-34 147.5 164 75.0
BcaB07g34065 Brassica carinata HOM05D007518 ORTHO05D008168 1.1e-33 147.1 94 79.8
CANSAT01G2215 Cannabis sativa HOM05D007518 ORTHO05D008168 2.5e-33 146.0 162 72.8
TWI53G0381 Tripterygium wilfordii HOM05D007518 ORTHO05D008168 3.3e-33 145.6 165 75.8
Potri.007G027400 Populus trichocarpa HOM05D007518 ORTHO05D008168 4.3e-33 145.2 164 75.0
Gohir.D03G015500 Gossypium hirsutum HOM05D007518 ORTHO05D008168 5.6e-33 144.8 164 73.8
QL06p045656 Quercus lobata HOM05D007518 ORTHO05D008168 5.6e-33 144.8 163 74.2
Cfa004294 Carpinus fangiana HOM05D007518 ORTHO05D008168 7.3e-33 144.4 164 73.2
CiPaw.02G016200 Carya illinoinensis HOM05D007518 ORTHO05D008168 7.3e-33 144.4 165 75.2
TAR628G0256 Trochodendron aralioides HOM05D007518 ORTHO05D008168 7.3e-33 144.4 165 73.3
CSS0014655 Camellia sinensis var. sinensis HOM05D007518 ORTHO05D008168 9.5e-33 144.1 163 74.8
Gorai.003G015700 Gossypium raimondii HOM05D007518 ORTHO05D008168 9.5e-33 144.1 164 73.8
Haze_15107 Corylus avellana HOM05D007518 ORTHO05D008168 1.2e-32 143.7 165 73.9
MD02G1150400 Malus domestica HOM05D007518 ORTHO05D008168 1.6e-32 143.3 165 72.1
Rhsim10G0067800 Rhododendron simsii HOM05D007518 ORTHO05D008168 1.6e-32 143.3 164 75.6
Aqoxy6G01075 Aquilegia oxysepala HOM05D007518 ORTHO05D008168 2.1e-32 142.9 164 72.6
Gohir.A02G164600 Gossypium hirsutum HOM05D007518 ORTHO05D008168 3.6e-32 142.1 163 72.4
Nn1g05049 Nelumbo nucifera HOM05D007518 ORTHO05D008168 4.7e-32 141.7 164 73.8
Thecc.01G037800 Theobroma cacao HOM05D007518 ORTHO05D008168 8.1e-32 141.0 163 72.4
CsaV3_6G046170 Cucumis sativus L. HOM05D007518 ORTHO05D008168 1.1e-31 140.6 162 73.5
Migut.L00282 Erythranthe guttata HOM05D007518 ORTHO05D008168 1.8e-31 139.8 163 71.2
Lalb_Chr09g0322501 Lupinus albus HOM05D007518 ORTHO05D008168 1.8e-31 139.8 162 72.2
Sc03g0000780 Simmondsia chinensis HOM05D007518 ORTHO05D008168 2.3e-31 139.4 153 73.9
COL.COLO4_22099 Corchorus olitorius HOM05D007518 ORTHO05D008168 4.0e-31 138.7 166 72.3
Nitab4.5_0016476g0010 Nicotiana tabacum HOM05D007518 ORTHO05D008168 4.0e-31 138.7 125 86.4
VMungo1215G2461 Vigna mungo HOM05D007518 ORTHO05D008168 4.0e-31 138.7 166 68.1
MELO3C007820.2 Cucumis melo HOM05D007518 ORTHO05D008168 6.8e-31 137.9 162 72.2
Phvul.002G029100 Phaseolus vulgaris HOM05D007518 ORTHO05D008168 6.8e-31 137.9 169 71.0
Prupe.7G152700 Prunus persica HOM05D007518 ORTHO05D008168 8.9e-31 137.5 167 70.1
AUR62007988 Chenopodium quinoa HOM05D006571 ORTHO05D007771 1.5e-30 136.7 134 82.1
AUR62003171 Chenopodium quinoa HOM05D007518 ORTHO05D008168 2.0e-30 136.3 165 70.9
Ah.03g139360 Amaranthus hybridus HOM05D007518 ORTHO05D008168 2.6e-30 136.0 164 70.1
Cfa004293 Carpinus fangiana HOM05D007518 ORTHO05D008168 2.6e-30 136.0 163 72.4
Lj2g0015504 Lotus japonicus HOM05D007518 ORTHO05D008168 3.4e-30 135.6 161 68.9
PGR119G2546 Punica granatum HOM05D007518 ORTHO05D008168 3.4e-30 135.6 164 70.7
MBI16_g37747_MAGBIO Magnolia biondii HOM05D007518 ORTHO05D008168 4.4e-30 135.2 165 73.3
Manes.01G134000 Manihot esculenta HOM05D007518 ORTHO05D008168 5.8e-30 134.8 165 70.9
Atru.chr3.555 Acer truncatum HOM05D007518 ORTHO05D008168 7.6e-30 134.4 167 69.5
PGSC0003DMG400017778 Solanum tuberosum HOM05D007518 ORTHO05D008168 7.6e-30 134.4 130 81.5
CAN.G1028.6 Capsicum annuum HOM05D007518 ORTHO05D008168 1.7e-29 133.3 166 67.5
Solyc03g034070.1 Solanum lycopersicum HOM05D007518 ORTHO05D008168 1.7e-29 133.3 122 84.4
Sopen03g006850 Solanum pennellii HOM05D007518 ORTHO05D008168 1.7e-29 133.3 122 84.4
SGA_v2.0_scaffold248G44914 Striga asiatica HOM05D007518 ORTHO05D008168 2.2e-29 132.9 159 70.4
Ciclev10026615m.g Citrus clementina HOM05D007518 ORTHO05D008168 4.9e-29 131.7 130 80.0
Lsat_1_v5_gn_3_78660 Lactuca sativa HOM05D007518 ORTHO05D008168 8.4e-29 131.0 169 66.3
Sed0026205 Sechium edule HOM05D007518 ORTHO05D008168 1.4e-28 130.2 164 70.1
TPR.G28676 Trifolium pratense HOM05D007518 ORTHO05D008168 1.4e-28 130.2 166 69.3
Cc07_g09360 Coffea canephora HOM05D007518 ORTHO05D008168 1.9e-28 129.8 165 69.1
FvH4_1g13510 Fragaria vesca HOM05D007518 ORTHO05D008168 2.4e-28 129.4 166 68.7
FAN19G2612 Fragaria x ananassa HOM05D007518 ORTHO05D008168 2.4e-28 129.4 166 68.7
FAN28G1656 Fragaria x ananassa HOM05D007518 ORTHO05D008168 2.4e-28 129.4 166 69.3
Medtr5g019920 Medicago truncatula HOM05D007518 ORTHO05D008168 2.4e-28 129.4 164 68.3
RcHm_v2.0_Chr2g0101891 Rosa chinensis HOM05D007518 ORTHO05D008168 3.2e-28 129.0 165 68.5
Nitab4.5_0001038g0130 Nicotiana tabacum HOM05D007518 ORTHO05D008168 9.2e-28 127.5 125 82.4
Oeu007443.1 Olea europaea HOM05D007518 ORTHO05D008168 9.2e-28 127.5 165 69.7
Eucgr.I02457 Eucalyptus grandis HOM05D007518 ORTHO05D008168 1.2e-27 127.1 170 67.6
PSO541G1957 Papaver somniferum HOM05D007518 ORTHO05D008168 1.2e-27 127.1 167 68.9
PSO675G1394 Papaver somniferum HOM05D007518 ORTHO05D008168 1.6e-27 126.7 167 68.9
HanXRQChr16g0530261 Helianthus annuus HOM05D007518 ORTHO05D008168 2.7e-27 125.9 134 79.1
unitig_62.g23458 Utricularia gibba HOM05D007518 ORTHO05D008168 6.6e-26 121.3 128 75.0
Pp3c15_7720 Physcomitrium patens HOM05D007518 ORTHO05D008168 1.9e-25 119.8 122 77.0
DCAR_021444 Daucus carota HOM05D007518 ORTHO05D008168 2.5e-25 119.4 167 63.5
Mapoly0168s0019 Marchantia polymorpha HOM05D007518 ORTHO05D008168 2.5e-25 119.4 143 72.0
Lj2P450T11 Lonicera japonica HOM05D007518 ORTHO05D008168 9.6e-25 117.5 128 78.9
Peaxi162Scf00751g00045 Petunia axillaris HOM05D007518 ORTHO05D008168 1.6e-24 116.7 125 64.8
Ca_00386_v3 Cicer arietinum L. HOM05D007518 ORTHO05D008168 2.1e-24 116.3 126 60.3
Dinv26823 Davidia involucrata HOM05D002420 ORTHO05D002422 1.1e-23 114.0 159 69.2
SEGI_19868 Sequoiadendron giganteum HOM05D007518 ORTHO05D008168 2.4e-23 112.8 166 65.1
ECA246G0481 Erigeron canadensis HOM05D000085 ORTHO05D000274 1.5e-22 110.2 125 78.4
SMO361G0359 Selaginella moellendorffii HOM05D007518 ORTHO05D008168 5.8e-22 108.2 113 75.2
ATR0733G025 Amborella trichopoda HOM05D007518 ORTHO05D008168 7.6e-22 107.8 132 69.7
Actinidia12117 Actinidia chinensis HOM05D007518 ORTHO05D008168 9.9e-22 107.5 101 65.3
Duzib187G0536 Durio zibethinus HOM05D007518 ORTHO05D008168 2.2e-21 106.3 98 63.3
Psat2g160680 Pisum sativum HOM05D007518 ORTHO05D008168 1.9e-20 103.2 118 77.1
CBR_g37409 Chara braunii HOM05D007518 ORTHO05D008168 7.1e-20 101.3 115 47.8
HPP92_023606 Vanilla planifolia HOM05D007518 ORTHO05D008168 3.9e-18 95.5 156 60.9
AagrBONN_evm.TU.Sc2ySwM_228.2926 Anthoceros agrestis HOM05D007518 ORTHO05D008168 1.4e-15 87.0 125 68.8
Zm00001eb098970 Zea mays HOM05D007518 ORTHO05D008168 4.0e-15 85.5 152 59.2
unitig_65.g29889 Utricularia gibba HOM05D007518 ORTHO05D008168 3.4e-14 82.4 89 71.9
Actinidia02774 Actinidia chinensis HOM05D007518 ORTHO05D008168 5.8e-14 81.6 127 44.1
SMO361G0415 Selaginella moellendorffii HOM05D007518 ORTHO05D008168 4.2e-12 75.5 100 40.0
PRCOL_00004191 Prasinoderma coloniale HOM05D007518 ORTHO05D008168 9.3e-12 74.3 114 64.0
Os10g0213700 Oryza sativa ssp. japonica HOM05D007518 ORTHO05D008168 1.7e-10 70.1 153 57.5
MCO12G314 Micromonas commoda HOM05D007518 ORTHO05D008168 1.1e-09 67.4 53 58.5
Cre01.g043200 Chlamydomonas reinhardtii HOM05D007518 ORTHO05D008168 9.6e-09 64.3 57 57.9
Atru.chr4.788 Acer truncatum HOM05D007518 ORTHO05D008168 9.9e-06 54.3 32 84.4


User provided reference genes

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