Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G30610 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 6.2e-109 397.5 207 100.0
AT3G50460 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 1.6e-101 372.9 207 93.2
CARHR159980 Cardamine hirsuta HOM05D008738 ORTHO05D010755 1.5e-83 313.2 208 78.4
Carub.0005s1679 Capsella rubella HOM05D008738 ORTHO05D010755 1.4e-76 290.0 192 80.2
AL5G30620 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 2.1e-72 276.2 214 68.2
Carub.0005s1680 Capsella rubella HOM05D008738 ORTHO05D010755 2.1e-72 276.2 214 67.8
AT3G50470 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 2.3e-71 272.7 214 67.3
BcaB01g00614 Brassica carinata HOM05D008738 ORTHO05D010755 1.6e-64 250.0 216 61.6
Thhalv10010714m.g Eutrema salsugineum HOM05D008738 ORTHO05D010755 1.8e-63 246.5 214 63.1
AL5G30600 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 1.7e-61 240.0 207 62.3
CARHR159990 Cardamine hirsuta HOM05D008738 ORTHO05D010755 7.0e-60 234.6 215 57.2
BcaB01g00613 Brassica carinata HOM05D008738 ORTHO05D010755 2.0e-59 233.0 214 57.5
A09p43500 Brassica napus HOM05D008738 ORTHO05D010755 4.5e-59 231.9 213 58.7
BcaC07g39509 Brassica carinata HOM05D008738 ORTHO05D010755 7.7e-59 231.1 213 58.7
BraA09t39815Z Brassica rapa HOM05D008738 ORTHO05D010755 2.2e-58 229.6 213 59.2
BcaC07g39511 Brassica carinata HOM05D008738 ORTHO05D010755 4.2e-57 225.3 215 59.1
A09p43510 Brassica napus HOM05D008738 ORTHO05D010755 1.6e-56 223.4 215 58.6
BolC8t50176H Brassica oleracea HOM05D008738 ORTHO05D010755 2.7e-56 222.6 214 57.0
C08p25550 Brassica napus HOM05D008738 ORTHO05D010755 3.0e-55 219.2 214 57.9
BraA09t39816Z Brassica rapa HOM05D008738 ORTHO05D010755 2.6e-54 216.1 214 57.0
A09p43530 Brassica napus HOM05D008738 ORTHO05D010755 4.4e-54 215.3 213 59.6
BraA09t39817Z Brassica rapa HOM05D008738 ORTHO05D010755 4.4e-54 215.3 213 58.7
Aa31LG4G18690 Aethionema arabicum HOM05D008738 ORTHO05D010755 2.2e-53 213.0 210 56.2
AT3G50450 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 4.8e-53 211.8 207 55.1
AL5G30630 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 1.2e-48 197.2 213 53.1
A03p47800 Brassica napus HOM05D008738 ORTHO05D010755 1.6e-48 196.8 208 53.8
BraA03t13890Z Brassica rapa HOM05D008738 ORTHO05D010755 1.6e-48 196.8 208 53.8
BcaC06g33094 Brassica carinata HOM05D008738 ORTHO05D010755 4.7e-48 195.3 215 53.0
A09p43550 Brassica napus HOM05D008738 ORTHO05D010755 1.5e-46 190.3 213 54.5
C08p25540 Brassica napus HOM05D008738 ORTHO05D010755 3.0e-34 149.4 149 59.1
Aa31LG4G18680 Aethionema arabicum HOM05D008738 ORTHO05D010755 7.0e-28 128.3 201 38.8
BcaB01g00612 Brassica carinata HOM05D008738 ORTHO05D010755 1.7e-18 97.1 154 39.6
BcaC06g33093 Brassica carinata HOM05D008738 ORTHO05D010755 3.9e-18 95.9 144 43.1
AT3G50480 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 4.6e-11 72.4 150 32.7
PSO210G7782 Papaver somniferum HOM05D000033 ORTHO05D030421 6.6e-10 68.6 141 26.2
Cfa003965 Carpinus fangiana HOM05D008738 ORTHO05D010755 8.7e-10 68.2 135 28.1
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 3.3e-09 66.2 138 31.9
Manes.12G094400 Manihot esculenta HOM05D058365 ORTHO05D010755 3.3e-09 66.2 202 26.2
Manes.12G094300 Manihot esculenta HOM05D058365 ORTHO05D010755 4.3e-09 65.9 202 27.2
Haze_15455 Corylus avellana HOM05D008738 ORTHO05D010755 7.3e-09 65.1 136 28.7
Haze_15456 Corylus avellana HOM05D008738 ORTHO05D010755 1.2e-08 64.3 132 27.3
Oeu036816.1 Olea europaea HOM05D000529 ORTHO05D036481 1.6e-08 63.9 143 29.4
RcHm_v2.0_Chr1g0326431 Rosa chinensis HOM05D000529 ORTHO05D000472 2.8e-08 63.2 144 29.9
Nitab4.5_0000681g0070 Nicotiana tabacum HOM05D000529 ORTHO05D010311 4.7e-08 62.4 139 31.7
Oeu005309.1 Olea europaea HOM05D000529 ORTHO05D000472 4.7e-08 62.4 146 29.5
PGSC0003DMG400010226 Solanum tuberosum HOM05D000529 ORTHO05D010311 2.4e-07 60.1 139 31.7
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 2.4e-07 60.1 136 30.9
C07p45760 Brassica napus HOM05D008738 ORTHO05D010755 3.1e-07 59.7 85 42.4
Cc07_g05690 Coffea canephora HOM05D000529 ORTHO05D010311 3.1e-07 59.7 138 29.7
Solyc02g077060.2 Solanum lycopersicum HOM05D000529 ORTHO05D010311 6.9e-07 58.5 141 31.2
Sabra07G0034600 Salix brachista HOM05D037871 ORTHO05D010755 9.0e-07 58.2 162 27.2
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 1.2e-06 57.8 144 28.5
Nitab4.5_0024858g0010 Nicotiana tabacum HOM05D000529 ORTHO05D010311 2.0e-06 57.0 139 29.5
CiPaw.02G010900 Carya illinoinensis HOM05D008738 ORTHO05D010755 3.4e-06 56.2 129 24.0
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 7.6e-06 55.1 115 27.0
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 7.6e-06 55.1 143 30.1


User provided reference genes

Program Settings