Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G30410 Arabidopsis lyrata HOM05D000300 ORTHO05D013149 1.5e-186 656.0 330 100.0
Thhalv10011092m.g Eutrema salsugineum HOM05D000300 ORTHO05D013149 1.0e-57 228.0 251 52.2
Aa31LG8G17620 Aethionema arabicum HOM05D000300 ORTHO05D013149 1.3e-44 184.5 327 37.6
AL3G53810 Arabidopsis lyrata HOM05D000300 ORTHO05D013149 1.8e-38 164.1 288 40.6
Thhalv10001973m.g Eutrema salsugineum HOM05D000300 ORTHO05D013149 1.2e-37 161.4 287 38.0
AT2G20720 Arabidopsis thaliana HOM05D000300 ORTHO05D013149 1.0e-33 148.3 286 38.8
BraA07t27797Z Brassica rapa HOM05D000300 ORTHO05D013149 1.2e-32 144.8 290 36.2
A07p00060 Brassica napus HOM05D000300 ORTHO05D013149 2.6e-32 143.7 290 36.2
Carub.0003s3523 Capsella rubella HOM05D000300 ORTHO05D013149 9.8e-32 141.7 294 36.7
BcaB03g16864 Brassica carinata HOM05D000300 ORTHO05D013149 2.9e-31 140.2 290 33.4
BcaC06g36762 Brassica carinata HOM05D000300 ORTHO05D013149 3.7e-31 139.8 298 35.2
BolC7t40470H Brassica oleracea HOM05D000300 ORTHO05D013149 3.7e-31 139.8 298 35.2
C07p00200 Brassica napus HOM05D000300 ORTHO05D013149 1.1e-30 138.3 298 35.2
Aa31LG8G17610 Aethionema arabicum HOM05D000300 ORTHO05D000383 1.6e-21 107.8 299 28.4
AT2G20710 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 2.1e-21 107.5 298 29.5
CARHR111350 Cardamine hirsuta HOM05D000300 ORTHO05D000383 2.7e-21 107.1 301 29.6
AL3G53800 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 1.7e-20 104.4 298 28.5
Sp3g33960 Schrenkiella parvula HOM05D000300 ORTHO05D000383 1.7e-20 104.4 291 30.9
Carub.0003s3522 Capsella rubella HOM05D000300 ORTHO05D000383 1.2e-18 98.2 298 28.5
BraA09t36941Z Brassica rapa HOM05D000300 ORTHO05D000383 2.1e-18 97.4 287 30.3
CARHR111370 Cardamine hirsuta HOM05D000300 ORTHO05D013149 2.1e-18 97.4 73 65.8
C09p15340 Brassica napus HOM05D000300 ORTHO05D000383 3.6e-18 96.7 284 29.9
BcaC04g22782 Brassica carinata HOM05D000300 ORTHO05D000383 4.7e-18 96.3 284 29.9
BolC9t54442H Brassica oleracea HOM05D000300 ORTHO05D000383 4.7e-18 96.3 284 29.9
Thhalv10001972m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 1.1e-17 95.1 293 29.7
A09p12950 Brassica napus HOM05D000300 ORTHO05D000383 1.4e-17 94.7 289 29.8
BcaB07g31583 Brassica carinata HOM05D000300 ORTHO05D000383 2.0e-16 90.9 288 28.5
TAR626G0872 Trochodendron aralioides HOM05D000300 ORTHO05D000383 4.4e-16 89.7 246 30.1
Aqoxy4G00881 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 3.7e-15 86.7 252 28.2
QL08p038536 Quercus lobata HOM05D000300 ORTHO05D000383 4.9e-15 86.3 270 28.1
GSVIVG01020533001 Vitis vinifera HOM05D000300 ORTHO05D000383 6.4e-15 85.9 307 25.4
Sed0022098 Sechium edule HOM05D000300 ORTHO05D000383 5.4e-14 82.8 247 25.5
TAR626G0522 Trochodendron aralioides HOM05D000300 ORTHO05D000383 5.4e-14 82.8 202 25.7
Lj1A724G17 Lonicera japonica HOM05D000300 ORTHO05D000383 7.1e-14 82.4 284 25.0
Dinv26428 Davidia involucrata HOM05D000300 ORTHO05D000383 9.2e-14 82.0 200 30.0
QL08p038541 Quercus lobata HOM05D000300 ORTHO05D000383 2.7e-13 80.5 196 28.6
Sed0023860 Sechium edule HOM05D000300 ORTHO05D000383 2.7e-13 80.5 201 26.4
CsaV3_7G004380 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.5e-13 80.1 201 25.4
THA.LOC104824703 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 6.0e-13 79.3 230 28.7
Ca_01505_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 7.8e-13 79.0 269 23.4
Dinv23648 Davidia involucrata HOM05D000300 ORTHO05D000383 1.3e-12 78.2 250 26.4
Ca_25911_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 1.7e-12 77.8 241 24.1
ClCG07G002970 Citrullus lanatus HOM05D000300 ORTHO05D000383 5.1e-12 76.3 201 24.9
Gohir.D12G142600 Gossypium hirsutum HOM05D000300 ORTHO05D000383 5.1e-12 76.3 245 25.7
Gorai.008G153900 Gossypium raimondii HOM05D000300 ORTHO05D000383 5.1e-12 76.3 245 25.7
CiPaw.10G022400 Carya illinoinensis HOM05D000300 ORTHO05D000383 8.6e-12 75.5 203 29.1
Lj3g0027073 Lotus japonicus HOM05D000300 ORTHO05D000383 8.6e-12 75.5 210 24.8
TAR626G0888 Trochodendron aralioides HOM05D000300 ORTHO05D000383 1.1e-11 75.1 240 27.9
Aqoxy4G00874 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 1.9e-11 74.3 264 25.4
MELO3C018741.2 Cucumis melo HOM05D000300 ORTHO05D000383 1.9e-11 74.3 228 23.7
MELO3C018742.2 Cucumis melo HOM05D000300 ORTHO05D000383 1.9e-11 74.3 242 25.6
Nn1g04066 Nelumbo nucifera HOM05D000300 ORTHO05D000383 1.9e-11 74.3 326 25.2
Prupe.3G136900 Prunus persica HOM05D000300 ORTHO05D000383 1.9e-11 74.3 314 24.8
TAR627G0683 Trochodendron aralioides HOM05D000300 ORTHO05D000383 1.9e-11 74.3 239 25.9
Haze_13151 Corylus avellana HOM05D000300 ORTHO05D000383 2.5e-11 73.9 300 24.3
MBI18_g16992_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D000383 2.5e-11 73.9 284 24.3
Prupe.3G136700 Prunus persica HOM05D000300 ORTHO05D000383 2.5e-11 73.9 246 26.8
Atru.chr8.1235 Acer truncatum HOM05D000300 ORTHO05D000383 3.3e-11 73.6 198 26.8
Aqoxy4G00891 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 3.3e-11 73.6 197 27.4
CsaV3_7G004370 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.3e-11 73.6 249 25.7
Aqoxy4G00888 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 4.3e-11 73.2 249 25.7
TPR.G6420 Trifolium pratense HOM05D000300 ORTHO05D000383 4.3e-11 73.2 283 23.3
Cpa.g.sc34.152 Carica papaya HOM05D000300 ORTHO05D000383 5.6e-11 72.8 197 25.9
Haze_13152 Corylus avellana HOM05D000300 ORTHO05D000383 7.3e-11 72.4 166 27.7
Duzib132G0424 Durio zibethinus HOM05D000300 ORTHO05D000383 7.3e-11 72.4 245 22.4
CSS0029523 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 9.6e-11 72.0 195 28.7
Dinv11915 Davidia involucrata HOM05D000300 ORTHO05D000383 1.2e-10 71.6 177 28.8
Psat5g271360 Pisum sativum HOM05D000300 ORTHO05D000383 1.2e-10 71.6 286 23.1
arahy.Tifrunner.gnm1.ann1.YT9B61 Arachis hypogaea HOM05D000300 ORTHO05D000383 2.1e-10 70.9 271 24.4
CiPaw.10G047800 Carya illinoinensis HOM05D000300 ORTHO05D000383 2.1e-10 70.9 266 24.8
Rhsim03G0057200 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.1e-10 70.9 198 28.3
Hma1.2p1_0304F.1_g119170 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 2.8e-10 70.5 197 28.9
Manes.12G084500 Manihot esculenta HOM05D000300 ORTHO05D000383 2.8e-10 70.5 215 25.1
Medtr2g090290 Medicago truncatula HOM05D000300 ORTHO05D000383 2.8e-10 70.5 264 22.7
Rhsim03G0056900 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.8e-10 70.5 198 28.3
arahy.Tifrunner.gnm1.ann1.N35TLR Arachis hypogaea HOM05D000300 ORTHO05D000383 3.6e-10 70.1 269 22.7
Actinidia03955 Actinidia chinensis HOM05D000300 ORTHO05D000383 4.7e-10 69.7 198 28.3
Aqoxy4G00892 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 4.7e-10 69.7 198 27.3
PGR042G2580 Punica granatum HOM05D000300 ORTHO05D000383 6.2e-10 69.3 200 26.0
QL07p025828 Quercus lobata HOM05D000300 ORTHO05D000383 6.2e-10 69.3 211 27.5
vmacro07531 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 8.1e-10 68.9 198 27.3
Aqoxy1G02476 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 1.1e-09 68.6 266 22.9
CANSAT78G0597 Cannabis sativa HOM05D000300 ORTHO05D000383 1.4e-09 68.2 264 23.1
ClCG07G002980 Citrullus lanatus HOM05D000300 ORTHO05D000383 1.4e-09 68.2 247 24.3
TPR.G21759 Trifolium pratense HOM05D000300 ORTHO05D000383 1.4e-09 68.2 242 24.0
TWI75G1717 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 1.4e-09 68.2 232 25.0
ATR0680G025 Amborella trichopoda HOM05D000300 ORTHO05D000383 2.4e-09 67.4 238 27.3
Aqoxy4G00916 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 2.4e-09 67.4 245 26.5
Aqoxy4G00922 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 3.1e-09 67.0 199 25.6
CsaV3_1G012220 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.1e-09 67.0 207 24.6
Rhsim04G0068200 Rhododendron simsii HOM05D000300 ORTHO05D000383 3.1e-09 67.0 202 26.2
MD09G1248900 Malus domestica HOM05D000300 ORTHO05D000383 4.0e-09 66.6 246 25.2
Dinv26429 Davidia involucrata HOM05D000300 ORTHO05D000383 5.2e-09 66.2 236 26.3
vmacro09279 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 5.2e-09 66.2 230 26.5
Dinv40549 Davidia involucrata HOM05D000300 ORTHO05D000383 6.8e-09 65.9 200 30.0
Medtr8g465890 Medicago truncatula HOM05D000300 ORTHO05D000383 6.8e-09 65.9 194 23.7
Nitab4.5_0004411g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 6.8e-09 65.9 219 25.6
RcHm_v2.0_Chr3g0477891 Rosa chinensis HOM05D000300 ORTHO05D000383 6.8e-09 65.9 204 26.0
MELO3C002597.2 Cucumis melo HOM05D000300 ORTHO05D000383 8.9e-09 65.5 119 32.8
Haze_20085 Corylus avellana HOM05D000300 ORTHO05D000383 1.2e-08 65.1 197 25.9
CSS0026918 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.5e-08 64.7 260 25.0
Prupe.8G026200 Prunus persica HOM05D000300 ORTHO05D000383 1.5e-08 64.7 308 24.0
Phvul.005G104300 Phaseolus vulgaris HOM05D000300 ORTHO05D000383 2.6e-08 63.9 246 22.4
Rhsim04G0068100 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.6e-08 63.9 202 26.2
Cfa020105 Carpinus fangiana HOM05D000300 ORTHO05D000383 3.4e-08 63.5 197 25.4
MELO3C002596.2 Cucumis melo HOM05D000300 ORTHO05D000383 3.4e-08 63.5 214 23.4
FAN02G2749 Fragaria x ananassa HOM05D000300 ORTHO05D000383 4.4e-08 63.2 204 24.5
Actinidia18764 Actinidia chinensis HOM05D000300 ORTHO05D000383 5.8e-08 62.8 190 27.4
ECA234G4398 Erigeron canadensis HOM05D000300 ORTHO05D000383 5.8e-08 62.8 268 20.9
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 7.6e-08 62.4 225 25.8
Peaxi162Scf00132g00232 Petunia axillaris HOM05D000300 ORTHO05D000383 7.6e-08 62.4 172 27.3
Dinv23647 Davidia involucrata HOM05D000300 ORTHO05D000383 9.9e-08 62.0 244 24.6
MD05G1022100 Malus domestica HOM05D000300 ORTHO05D000383 9.9e-08 62.0 194 25.3
Sed0017099 Sechium edule HOM05D000300 ORTHO05D000383 9.9e-08 62.0 119 31.1
Actinidia09858 Actinidia chinensis HOM05D000300 ORTHO05D000383 1.3e-07 61.6 198 25.8
Sabra13G0112000 Salix brachista HOM05D000300 ORTHO05D000383 1.3e-07 61.6 263 22.4
Sabra13G0112700 Salix brachista HOM05D000300 ORTHO05D000383 1.3e-07 61.6 184 24.5
CSS0029904 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 2.2e-07 60.8 267 24.3
CAN.G413.26 Capsicum annuum HOM05D000300 ORTHO05D000383 2.2e-07 60.8 134 31.3
RcHm_v2.0_Chr6g0276181 Rosa chinensis HOM05D000300 ORTHO05D000383 2.2e-07 60.8 168 26.8
PGSC0003DMG400022826 Solanum tuberosum HOM05D000300 ORTHO05D000383 2.2e-07 60.8 213 27.2
SalBow5G3377 Salvia bowleyana HOM05D000300 ORTHO05D000383 2.9e-07 60.5 321 23.7
CSS0011290 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 3.8e-07 60.1 267 24.3
Dinv07554 Davidia involucrata HOM05D000300 ORTHO05D000383 3.8e-07 60.1 213 26.8
Glyma.12G203800 Glycine max HOM05D000300 ORTHO05D000383 3.8e-07 60.1 246 23.6
Actinidia05627 Actinidia chinensis HOM05D000300 ORTHO05D000383 4.9e-07 59.7 198 27.3
ECA246G5073 Erigeron canadensis HOM05D000300 ORTHO05D000383 6.4e-07 59.3 260 25.4
Lsat_1_v5_gn_3_38180 Lactuca sativa HOM05D000300 ORTHO05D000383 6.4e-07 59.3 262 26.0
Aqoxy4G00925 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 8.4e-07 58.9 130 29.2
Potri.013G133000 Populus trichocarpa HOM05D000300 ORTHO05D000383 8.4e-07 58.9 195 24.6
EL10Ac5g11777 Beta vulgaris HOM05D000300 ORTHO05D000383 1.1e-06 58.5 217 23.5
CiPaw.03G176200 Carya illinoinensis HOM05D000300 ORTHO05D000383 1.1e-06 58.5 199 23.6
Sabra13G0111800 Salix brachista HOM05D000300 ORTHO05D000383 1.1e-06 58.5 201 24.4
ClCG03G005990 Citrullus lanatus HOM05D000300 ORTHO05D000383 1.4e-06 58.2 118 31.4
COL.COLO4_30180 Corchorus olitorius HOM05D000300 ORTHO05D000383 1.4e-06 58.2 163 24.5
Aqoxy4G00887 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 1.9e-06 57.8 119 26.1
Hma1.2p1_0881F.1_g232100 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 1.9e-06 57.8 184 25.0
Medtr2g047855 Medicago truncatula HOM05D000300 ORTHO05D000383 1.9e-06 57.8 260 20.8
arahy.Tifrunner.gnm1.ann1.MM5I5L Arachis hypogaea HOM05D000300 ORTHO05D000383 2.4e-06 57.4 204 26.5
COL.COLO4_30179 Corchorus olitorius HOM05D000300 ORTHO05D000383 2.4e-06 57.4 254 20.9
Nitab4.5_0003942g0120 Nicotiana tabacum HOM05D000300 ORTHO05D000383 2.4e-06 57.4 194 24.7
Peaxi162Scf00530g00221 Petunia axillaris HOM05D000300 ORTHO05D000383 3.2e-06 57.0 194 24.2
Nitab4.5_0010497g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 4.2e-06 56.6 254 21.3
Atru.chr8.1237 Acer truncatum HOM05D000300 ORTHO05D000383 5.4e-06 56.2 122 27.9
Migut.H01930 Erythranthe guttata HOM05D000300 ORTHO05D000383 5.4e-06 56.2 181 27.6
AL1G41540 Arabidopsis lyrata HOM05D000300 ORTHO05D017381 7.1e-06 55.8 198 25.8
CSS0000289 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 7.1e-06 55.8 200 26.5
CSS0011376 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 7.1e-06 55.8 200 26.5
CsaV3_1G012250 Cucumis sativus L. HOM05D000300 ORTHO05D012934 7.1e-06 55.8 104 31.7
THA.LOC104813359 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 7.1e-06 55.8 209 25.4
AT1G28020 Arabidopsis thaliana HOM05D000300 ORTHO05D017381 9.3e-06 55.5 169 27.2
FvH4_6g21294 Fragaria vesca HOM05D000300 ORTHO05D000383 9.3e-06 55.5 218 25.7


User provided reference genes

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