Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.1e-273 946.0 500 100.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.7e-229 799.3 504 84.9
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 9.8e-217 756.9 507 81.1
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 6.6e-205 717.6 503 78.1
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.1e-199 700.3 518 75.3
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.9e-189 665.2 506 73.5
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 7.1e-175 617.8 508 70.1
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 4.6e-174 615.1 506 70.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.6e-174 615.1 507 70.6
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.1e-170 604.0 508 69.9
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.4e-170 603.6 514 69.5
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.4e-170 603.6 514 69.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 4.3e-164 582.0 511 66.3
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 7.1e-151 538.1 527 60.0
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.1e-126 455.3 534 52.2
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 6.7e-125 451.8 536 52.2
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 4.4e-124 449.1 537 51.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 2.0e-121 440.3 539 51.4
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.6e-121 439.9 539 51.4
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.9e-121 438.7 540 51.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.7e-118 429.9 551 48.3
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.7e-115 420.6 539 49.0
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.2e-115 420.2 555 48.5
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 6.3e-115 418.7 545 47.2
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.2e-113 414.5 537 49.2
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.5e-113 412.5 511 49.1
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.5e-111 407.5 545 47.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.5e-111 407.5 537 49.3
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 4.2e-111 406.0 545 47.9
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 2.1e-110 403.7 550 47.5
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 7.5e-108 395.2 541 46.6
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 9.8e-108 394.8 528 46.4
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.3e-107 394.4 539 46.9
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.7e-107 394.0 543 47.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.3e-107 392.1 549 47.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 8.3e-107 391.7 529 47.4
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.4e-106 391.0 543 46.6
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.8e-106 390.6 553 46.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.8e-106 390.6 543 46.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.8e-106 390.6 525 46.9
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 5.9e-105 385.6 518 47.1
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 7.7e-105 385.2 537 47.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.3e-104 384.4 530 46.2
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 2.9e-104 383.3 542 45.8
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 8.5e-104 381.7 554 45.8
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 4.2e-103 379.4 538 46.1
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 4.2e-103 379.4 538 46.8
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 4.2e-103 379.4 569 45.0
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.5e-103 379.0 527 47.6
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 5.5e-103 379.0 534 47.4
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.2e-102 377.9 535 46.5
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 4.7e-102 375.9 527 47.1
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 4.7e-102 375.9 542 45.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.2e-100 371.3 541 45.7
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.5e-100 370.9 523 47.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.4e-100 369.8 539 45.5
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.4e-100 369.8 595 42.7
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 9.8e-100 368.2 541 44.5
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.3e-99 367.9 526 47.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.7e-99 367.5 525 45.9
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.8e-99 366.7 547 45.5
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 4.9e-99 365.9 533 45.8
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 4.9e-99 365.9 533 45.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 6.3e-99 365.5 538 45.7
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.8e-98 364.0 558 44.4
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.8e-98 364.0 529 45.4
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.8e-98 364.0 546 44.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 3.1e-98 363.2 531 46.3
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 9.1e-98 361.7 520 46.0
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 2.7e-97 360.1 517 44.9
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 7.7e-97 358.6 544 45.0
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.0e-96 358.2 508 45.7
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.3e-96 357.8 537 44.5
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.6e-94 350.9 546 43.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.4e-93 347.8 529 44.0
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.0e-93 346.3 516 45.3
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 4.0e-93 346.3 545 42.8
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.8e-93 345.5 542 43.4
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.2e-92 344.7 516 45.2
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.2e-92 344.7 551 43.9
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.5e-92 344.4 512 43.6
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.6e-92 343.6 544 44.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.3e-91 339.0 533 42.4
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.8e-90 337.4 534 42.1
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.2e-89 334.7 543 42.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.2e-89 334.7 543 42.7
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.0e-88 331.6 617 39.2
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.7e-88 330.9 545 42.6
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-88 330.9 538 42.0
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.9e-88 329.7 538 41.8
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.5e-87 327.0 535 43.6
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 4.3e-87 326.2 543 42.2
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 9.5e-87 325.1 513 43.5
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.6e-86 323.2 536 42.4
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.7e-86 322.8 519 44.3
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 4.0e-85 319.7 536 41.8
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 5.2e-85 319.3 533 42.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 6.8e-85 318.9 541 41.4
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.6e-84 317.0 540 42.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 3.4e-84 316.6 494 43.5
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 7.5e-84 315.5 520 42.7
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 7.5e-84 315.5 448 45.5
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 3.2e-82 310.1 560 40.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.6e-81 306.2 453 44.4
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 2.3e-80 303.9 482 44.2
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.5e-79 301.2 416 47.4
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 2.6e-76 290.4 497 40.4
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.4e-74 284.6 523 39.4
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 3.0e-72 276.9 550 38.4
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.4e-68 263.5 576 37.7
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 8.4e-67 258.8 658 31.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 6.0e-65 252.7 292 50.3
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 8.6e-64 248.8 232 58.2
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.0e-61 240.0 507 37.3
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.7e-59 234.6 316 48.4
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 4.9e-59 233.0 504 36.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 8.4e-59 232.3 506 37.5
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 8.4e-59 232.3 506 37.5
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 3.2e-58 230.3 355 44.5
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.8e-52 209.5 581 33.4
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.0e-48 198.7 396 39.1
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 5.3e-45 186.4 594 33.5
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-44 185.3 386 38.9
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.4e-37 161.8 228 43.9
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.8e-37 161.4 181 53.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.1e-37 160.6 413 36.8
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.0e-37 159.1 281 39.9
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.8e-36 156.4 157 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 8.2e-30 136.0 531 30.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.4e-29 135.2 507 29.0
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 3.1e-29 134.0 251 40.2
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 4.1e-29 133.7 716 27.4
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.2e-26 124.0 183 45.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 1.2e-25 122.1 129 61.2
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.0e-24 119.0 230 37.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.0e-24 119.0 439 27.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.9e-23 114.8 239 37.2
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.3e-23 113.6 200 41.5
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.1e-17 94.7 90 55.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.4e-15 86.3 85 54.1
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.3e-13 80.1 130 40.8
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 2.9e-11 74.3 186 34.9
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.0e-11 73.6 83 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.9e-10 71.6 500 26.6
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 8.8e-08 62.8 496 25.6
A09p43120 Brassica napus HOM05D000091 ORTHO05D004312 2.6e-07 61.2 58 56.9
BraA09t39782Z Brassica rapa HOM05D000091 ORTHO05D004312 2.6e-07 61.2 58 56.9
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.4e-07 60.5 112 42.0
BcaC07g39466 Brassica carinata HOM05D004539 ORTHO05D005482 1.3e-06 58.9 44 65.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.8e-06 57.0 137 38.7


User provided reference genes

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