Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 6.6e-117 424.1 221 100.0
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 4.2e-103 378.3 221 88.2
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 1.9e-87 326.2 222 77.9
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 2.1e-86 322.8 204 80.9
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 6.1e-86 321.2 221 77.4
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 2.2e-83 312.8 216 76.9
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 2.8e-75 285.8 219 71.7
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 4.2e-71 271.9 225 68.9
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 7.9e-70 267.7 209 71.8
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 9.1e-58 227.6 225 59.1
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 9.1e-58 227.6 225 59.1
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 1.3e-56 223.8 197 62.9
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 1.1e-47 194.1 211 51.7
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 1.4e-45 187.2 212 49.1
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 9.8e-44 181.0 225 48.4
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 1.7e-43 180.3 223 46.2
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 3.7e-43 179.1 204 48.0
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 1.1e-42 177.6 216 49.5
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 1.4e-42 177.2 222 47.3
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 1.8e-42 176.8 213 46.0
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 1.8e-42 176.8 229 46.7
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 3.1e-42 176.0 197 48.7
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 7.0e-42 174.9 230 48.7
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 9.2e-42 174.5 210 45.7
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.7e-41 172.9 195 48.2
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 2.7e-41 172.9 221 46.2
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 2.7e-41 172.9 218 46.3
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 3.5e-41 172.6 213 48.8
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 5.9e-41 171.8 208 46.2
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.0e-40 171.0 225 45.8
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.0e-40 171.0 225 45.8
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 1.0e-40 171.0 203 47.8
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.3e-40 170.6 203 47.3
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 1.7e-40 170.2 206 47.6
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 2.9e-40 169.5 219 46.1
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 2.9e-40 169.5 213 45.1
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 3.8e-40 169.1 209 47.8
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 6.6e-40 168.3 215 46.0
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 1.1e-39 167.5 214 46.3
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.1e-39 167.5 214 43.0
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 1.5e-39 167.2 208 47.1
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 3.3e-39 166.0 204 44.1
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 4.3e-39 165.6 214 46.3
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 4.3e-39 165.6 222 47.3
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 1.2e-38 164.1 219 43.4
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 2.8e-38 162.9 210 44.3
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 2.8e-38 162.9 206 48.1
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 3.6e-38 162.5 212 44.3
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 3.6e-38 162.5 203 46.8
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 6.1e-38 161.8 195 46.7
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.0e-37 161.0 211 45.5
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 1.8e-37 160.2 201 46.3
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 5.2e-37 158.7 203 44.8
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 1.5e-36 157.1 210 42.4
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 2.0e-36 156.8 213 42.3
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 2.6e-36 156.4 160 56.9
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 2.6e-36 156.4 207 46.4
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 2.6e-36 156.4 220 43.6
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 3.4e-36 156.0 204 43.6
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 3.4e-36 156.0 197 43.7
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 4.4e-36 155.6 159 56.6
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 7.5e-36 154.8 203 44.3
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 1.7e-35 153.7 205 41.5
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 2.9e-35 152.9 206 43.2
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 1.8e-34 150.2 207 44.4
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 3.2e-34 149.4 168 46.4
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 1.2e-33 147.5 141 52.5
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 1.2e-33 147.5 176 45.5
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.6e-33 147.1 210 45.7
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 2.0e-33 146.7 214 41.6
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 2.7e-33 146.4 202 43.1
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 2.7e-33 146.4 204 42.6
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 7.8e-33 144.8 199 44.2
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 1.3e-32 144.1 208 40.9
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.7e-32 143.7 200 44.5
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 2.3e-32 143.3 201 41.3
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 6.6e-32 141.7 213 43.2
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 6.6e-32 141.7 193 44.0
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 1.5e-31 140.6 205 44.4
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 1.2e-30 137.5 199 44.2
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 2.8e-30 136.3 199 41.2
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 3.6e-30 136.0 198 43.9
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 1.0e-29 134.4 155 48.4
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 5.2e-29 132.1 202 41.6
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 4.4e-28 129.0 234 36.8
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 7.5e-28 128.3 243 38.7
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 4.9e-27 125.6 196 39.8
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 1.9e-26 123.6 112 54.5
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 1.9e-26 123.6 218 37.2
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 1.2e-25 120.9 150 45.3
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 8.6e-24 114.8 302 31.8
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 5.6e-23 112.1 204 37.7
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 9.5e-23 111.3 213 34.7
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 4.7e-22 109.0 135 52.6
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 1.9e-18 97.1 188 36.7
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.9e-18 97.1 98 54.1
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 7.1e-18 95.1 180 33.9
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 2.5e-15 86.7 145 40.7
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 4.3e-15 85.9 141 38.3
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 3.6e-14 82.8 139 41.0
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 5.8e-12 75.5 183 32.2
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 4.9e-11 72.4 71 56.3
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 6.4e-11 72.0 126 39.7
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 2.1e-09 67.0 231 29.4
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 8.6e-08 61.6 163 29.4
Mapoly0001s0294 Marchantia polymorpha HOM05D006223 ORTHO05D009080 7.3e-07 58.5 219 30.1


User provided reference genes

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