Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 6.0e-269 930.6 607 100.0
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.2e-154 550.1 611 69.2
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.0e-151 541.2 609 69.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 6.2e-149 531.9 607 65.9
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 6.0e-136 488.8 627 66.0
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.2e-130 470.3 583 65.7
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.4e-129 467.6 571 65.8
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.5e-129 466.8 585 65.3
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 3.3e-118 429.9 617 61.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.5e-113 413.7 572 67.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.6e-112 411.0 572 67.1
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 6.1e-112 409.1 615 60.3
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 6.8e-79 299.3 205 83.4
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.3e-61 241.9 504 48.6
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.9e-52 211.5 211 58.8
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.4e-52 211.1 224 58.9
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 9.2e-52 209.1 194 62.4
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 9.2e-52 209.1 249 52.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.2e-51 208.8 251 52.6
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 2.7e-51 207.6 233 55.4
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 7.8e-51 206.1 205 60.5
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.0e-50 205.7 215 59.5
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.3e-50 205.3 249 54.6
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.0e-50 204.1 199 57.8
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.0e-50 204.1 246 54.5
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 5.1e-50 203.4 199 58.8
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 6.6e-50 203.0 205 59.5
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 6.6e-50 203.0 217 56.7
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 8.6e-50 202.6 190 59.5
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 1.5e-49 201.8 249 52.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 3.3e-49 200.7 208 57.7
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 4.3e-49 200.3 254 53.1
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.3e-49 200.3 212 58.0
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.6e-49 199.9 245 53.9
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 9.5e-49 199.1 197 57.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 3.6e-48 197.2 226 54.0
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 4.7e-48 196.8 250 52.4
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 6.2e-48 196.4 216 54.2
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 6.2e-48 196.4 250 52.0
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.1e-47 195.7 146 72.6
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.4e-47 195.3 211 57.3
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.4e-47 195.3 211 57.3
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 3.1e-47 194.1 603 41.1
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.1e-47 194.1 211 57.3
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.2e-47 193.4 208 56.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.2e-47 193.4 208 56.7
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.6e-46 191.0 191 58.1
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.4e-46 190.7 127 78.0
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.4e-46 190.7 270 47.4
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.9e-45 187.6 244 49.6
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 3.7e-45 187.2 254 51.6
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-44 185.7 252 50.0
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-44 185.7 252 50.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 7.1e-44 183.0 244 46.7
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.2e-43 182.2 265 47.2
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.2e-43 182.2 208 55.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.6e-43 181.8 208 55.8
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.1e-43 181.4 208 55.3
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.7e-43 181.0 215 51.2
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 6.0e-43 179.9 242 50.8
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 6.0e-43 179.9 204 52.5
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 7.8e-43 179.5 230 47.8
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.3e-42 178.7 181 55.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.3e-42 177.9 146 66.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 3.9e-42 177.2 207 52.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 5.1e-42 176.8 240 52.1
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 6.6e-42 176.4 260 46.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 8.6e-42 176.0 209 51.7
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 8.6e-42 176.0 215 50.7
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.1e-41 175.6 190 55.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.5e-41 175.3 213 51.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.9e-41 174.9 198 51.0
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.9e-41 174.9 149 63.1
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.5e-41 174.5 166 60.2
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 2.5e-41 174.5 212 51.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 3.3e-41 174.1 213 51.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.3e-41 173.7 202 52.5
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.3e-41 172.9 209 51.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 7.3e-41 172.9 243 49.4
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 9.6e-41 172.6 213 51.2
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 9.6e-41 172.6 207 53.6
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 9.6e-41 172.6 207 54.6
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 4.7e-40 170.2 154 63.0
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 8.1e-40 169.5 519 38.7
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 4.4e-38 163.7 143 64.3
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.6e-38 162.9 147 62.6
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 7.6e-38 162.9 176 54.5
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 7.6e-38 162.9 145 64.1
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 4.9e-37 160.2 201 50.2
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 4.9e-37 160.2 145 64.1
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 8.4e-37 159.5 187 48.1
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.4e-37 159.5 147 61.9
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.4e-36 157.9 139 66.9
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.4e-36 157.9 171 51.5
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 2.4e-36 157.9 143 61.5
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.2e-36 157.5 216 45.8
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.1e-35 154.8 111 73.9
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 4.6e-35 153.7 105 77.1
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 7.8e-35 152.9 145 57.9
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.0e-34 152.5 118 70.3
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.7e-34 151.8 202 52.5
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.7e-34 151.8 195 47.2
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.3e-34 151.4 119 67.2
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.3e-34 151.4 114 71.9
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 5.1e-34 150.2 105 75.2
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 6.6e-34 149.8 113 69.9
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 8.7e-34 149.4 190 48.9
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.1e-33 149.1 115 64.3
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 3.3e-33 147.5 111 71.2
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.8e-32 143.7 130 62.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.6e-30 137.9 186 45.2
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 2.9e-29 134.4 256 41.0
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.9e-28 131.7 129 59.7
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 9.3e-28 129.4 190 46.3
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.6e-27 128.6 233 41.2
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.7e-27 127.9 92 73.9
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 6.0e-27 126.7 107 70.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 7.9e-27 126.3 197 45.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.3e-26 124.8 675 33.0
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.7e-26 122.9 136 56.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.5e-25 122.1 656 32.6
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.3e-25 120.9 147 51.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.3e-25 120.9 147 51.0
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 3.3e-25 120.9 96 66.7
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 5.6e-25 120.2 81 75.3
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.6e-25 120.2 91 63.7
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.6e-24 118.6 103 62.1
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.4e-23 114.8 630 31.1
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.9e-23 113.2 161 41.6
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.2e-22 112.5 137 50.4
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.4e-22 110.9 109 55.0
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 4.5e-22 110.5 105 57.1
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 9.9e-22 109.4 108 57.4
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.3e-21 109.0 114 57.0
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.7e-21 108.6 135 48.9
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.9e-21 107.8 149 50.3
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 6.4e-21 106.7 104 55.8
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 8.4e-21 106.3 108 54.6
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.4e-20 105.5 100 57.0
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.4e-20 104.8 114 54.4
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.4e-20 104.8 157 43.9
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 3.2e-20 104.4 107 54.2
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.5e-19 100.9 101 54.5
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.6e-19 100.5 118 48.3
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 6.0e-19 100.1 105 53.3
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.0e-18 99.4 182 42.9
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.0e-18 97.8 101 54.5
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 4.3e-17 94.0 77 71.4
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 5.6e-17 93.6 102 50.0
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 9.6e-17 92.8 116 48.3
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 6.2e-16 90.1 62 79.0
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.6e-14 84.7 111 46.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 3.4e-14 84.3 108 44.4
BcaC07g37448 Brassica carinata HOM05D050459 ORTHO05D039820 4.9e-13 80.5 106 50.9
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 8.4e-13 79.7 180 37.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 8.4e-13 79.7 114 43.9
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.4e-12 79.0 150 34.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 3.2e-12 77.8 51 80.4
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-11 74.3 53 69.8
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 1.8e-10 72.0 65 63.1
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.8e-10 72.0 145 42.1
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 5.1e-10 70.5 106 39.6
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.6e-08 65.5 68 51.5


User provided reference genes

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