Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 6.7e-42 173.7 95 100.0
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.6e-35 152.5 95 87.4
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.1e-33 146.4 94 83.0
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 4.4e-33 144.4 93 82.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.4e-33 144.4 95 78.9
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 2.8e-32 141.7 93 79.6
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.7e-32 141.4 90 83.3
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.8e-31 139.0 85 85.9
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 5.3e-31 137.5 86 84.9
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 9.1e-31 136.7 90 80.0
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 2.2e-29 132.1 84 84.5
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 3.8e-29 131.3 90 78.9
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 1.1e-28 129.8 90 77.8
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 1.5e-28 129.4 90 78.9
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 1.5e-28 129.4 90 78.9
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.2e-28 127.9 92 77.2
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 5.5e-28 127.5 83 81.9
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 5.5e-28 127.5 83 81.9
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 6.1e-27 124.0 93 68.8
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 8.0e-27 123.6 90 75.6
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.0e-26 123.2 89 71.9
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.2e-26 120.9 93 66.7
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 5.2e-26 120.9 93 66.7
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 8.8e-26 120.2 85 76.5
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.2e-25 119.8 89 68.5
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 1.5e-25 119.4 92 67.4
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 1.5e-25 119.4 92 67.4
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 1.5e-25 119.4 92 67.4
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 4.4e-25 117.9 92 67.4
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 4.4e-25 117.9 92 67.4
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 7.5e-25 117.1 92 64.1
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 2.8e-24 115.2 89 67.4
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.2e-24 113.6 67 91.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.4e-23 112.8 95 64.2
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.8e-23 112.5 89 65.2
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.4e-23 112.1 91 62.6
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 4.1e-23 111.3 91 64.8
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 4.1e-23 111.3 91 64.8
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 9.1e-23 110.2 91 63.7
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 9.1e-23 110.2 91 63.7
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 5.0e-21 104.4 76 71.1
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.1e-20 103.2 90 66.7
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 2.1e-19 99.0 62 83.9
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.4e-15 85.5 78 62.8
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 1.6e-14 82.8 65 69.2
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 2.0e-14 82.4 91 51.6
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.3e-13 79.7 78 56.4
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.3e-13 79.7 78 56.4
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.8e-13 78.2 91 50.5
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 8.6e-13 77.0 80 56.2
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 8.6e-13 77.0 89 53.9
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.1e-12 76.6 82 56.1
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.1e-12 76.6 97 49.5
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.5e-12 76.3 85 52.9
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-12 76.3 80 57.5
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.9e-12 75.9 83 54.2
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 2.5e-12 75.5 77 55.8
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.5e-12 75.5 86 52.3
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 3.2e-12 75.1 79 55.7
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 3.2e-12 75.1 79 55.7
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 4.2e-12 74.7 90 48.9
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 5.5e-12 74.3 82 54.9
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 7.2e-12 73.9 78 52.6
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.6e-11 72.8 93 50.5
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.6e-11 72.8 99 42.4
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.6e-11 72.8 74 54.1
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.6e-11 72.8 80 55.0
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.1e-11 72.4 83 50.6
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.1e-11 72.4 80 55.0
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.6e-11 71.6 73 57.5
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.6e-11 71.6 92 48.9
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.7e-11 71.2 84 50.0
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 4.7e-11 71.2 78 51.3
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 6.1e-11 70.9 96 46.9
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 6.1e-11 70.9 78 48.7
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 8.0e-11 70.5 78 47.4
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.0e-10 70.1 75 53.3
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.0e-10 70.1 83 51.8
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 1.4e-10 69.7 79 53.2
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.3e-10 68.9 76 48.7
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 3.0e-10 68.6 88 46.6
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 3.0e-10 68.6 72 54.2
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 4.0e-10 68.2 81 49.4
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 4.0e-10 68.2 84 47.6
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.0e-10 68.2 80 51.2
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.2e-10 67.8 81 51.9
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 5.2e-10 67.8 80 55.0
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 5.2e-10 67.8 52 65.4
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 6.8e-10 67.4 75 49.3
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 6.8e-10 67.4 75 54.7
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 8.8e-10 67.0 79 49.4
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 8.8e-10 67.0 80 53.8
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 8.8e-10 67.0 80 53.8
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.8e-10 67.0 77 53.2
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.5e-09 66.2 79 49.4
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-09 66.2 95 47.4
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.5e-09 66.2 90 52.2
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.0e-09 65.9 78 50.0
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.0e-09 65.9 83 48.2
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 2.0e-09 65.9 74 50.0
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.0e-09 65.9 80 51.2
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.6e-09 65.5 101 46.5
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 2.6e-09 65.5 89 44.9
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.6e-09 65.5 74 50.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 2.6e-09 65.5 79 50.6
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.4e-09 65.1 86 51.2
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 3.4e-09 65.1 82 50.0
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.4e-09 64.7 73 54.8
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 4.4e-09 64.7 93 44.1
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 4.4e-09 64.7 79 49.4
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 4.4e-09 64.7 79 49.4
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 4.4e-09 64.7 75 48.0
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 4.4e-09 64.7 56 57.1
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.4e-09 64.7 80 50.0
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 5.7e-09 64.3 95 49.5
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 7.5e-09 63.9 79 50.6
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 7.5e-09 63.9 53 60.4
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.5e-09 63.9 73 46.6
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.5e-09 63.9 80 48.8
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 9.8e-09 63.5 77 51.9
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 9.8e-09 63.5 78 48.7
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 9.8e-09 63.5 75 53.3
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.3e-08 63.2 78 47.4
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.7e-08 62.8 61 50.8
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 1.7e-08 62.8 103 45.6
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.7e-08 62.8 76 50.0
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 2.2e-08 62.4 95 44.2
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 2.2e-08 62.4 80 48.8
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.8e-08 62.0 83 49.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.8e-08 62.0 83 49.4
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 3.7e-08 61.6 73 49.3
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.7e-08 61.6 80 50.0
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.7e-08 61.6 80 47.5
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 4.9e-08 61.2 74 47.3
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 6.3e-08 60.8 52 59.6
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 6.3e-08 60.8 86 48.8
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 8.3e-08 60.5 79 45.6
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 8.3e-08 60.5 86 47.7
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 8.3e-08 60.5 81 49.4
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 8.3e-08 60.5 74 48.6
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 1.1e-07 60.1 86 43.0
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.1e-07 60.1 69 53.6
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.8e-07 59.3 88 46.6
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.8e-07 59.3 82 43.9
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 2.4e-07 58.9 78 47.4
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 5.4e-07 57.8 67 49.3
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 7.0e-07 57.4 78 42.3
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 7.0e-07 57.4 88 42.0
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.0e-07 57.4 80 47.5
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 7.0e-07 57.4 67 50.7
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 9.2e-07 57.0 84 45.2
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 9.2e-07 57.0 92 43.5
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.2e-07 57.0 78 42.3
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 9.2e-07 57.0 86 44.2
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.2e-06 56.6 80 47.5
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.6e-06 56.2 49 59.2
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.6e-06 56.2 77 45.5
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.6e-06 56.2 81 44.4
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.7e-06 55.5 84 46.4
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.7e-06 55.5 98 41.8
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 2.7e-06 55.5 75 45.3
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.5e-06 55.1 73 43.8
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 3.5e-06 55.1 76 48.7
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 4.5e-06 54.7 82 43.9
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.5e-06 54.7 93 44.1
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 4.5e-06 54.7 74 44.6


User provided reference genes

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