Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 0.0e+00 1739.5 911 100.0
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 0.0e+00 1419.1 956 82.0
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 0.0e+00 1315.4 947 77.4
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 0.0e+00 1150.6 960 69.8
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 2.4e-282 975.7 955 62.2
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 3.5e-273 945.3 946 61.7
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 4.3e-263 911.8 948 60.1
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 4.3e-263 911.8 948 60.1
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 5.1e-248 861.7 945 58.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 4.8e-246 855.1 945 58.6
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 6.3e-246 854.7 947 58.3
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 8.8e-240 834.3 967 55.5
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-231 807.4 945 56.6
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 4.4e-223 778.9 952 56.3
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 2.2e-219 766.5 944 55.1
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 2.7e-212 743.0 899 55.6
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-192 677.9 951 49.3
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.1e-192 677.9 951 49.3
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.3e-187 660.2 947 49.6
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 3.0e-187 659.8 947 49.5
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 2.1e-177 627.1 936 49.3
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.2e-167 594.7 932 48.4
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 5.8e-167 592.4 932 48.4
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 4.3e-130 469.9 1068 36.6
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.6e-114 417.5 948 37.0
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 8.7e-30 136.7 200 46.0
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 5.8e-26 124.0 714 27.3
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 3.5e-23 114.8 581 27.0
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 3.5e-23 114.8 350 32.0
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 7.9e-23 113.6 356 30.1
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 3.9e-22 111.3 357 30.0
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.1e-21 109.8 742 24.1
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 3.1e-19 101.7 325 29.2
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 6.9e-19 100.5 229 32.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 3.8e-17 94.7 282 28.4
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 5.0e-17 94.4 184 33.2
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 6.5e-17 94.0 455 25.7
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.9e-16 92.4 372 26.9
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.5e-16 92.0 249 29.7
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 2.5e-16 92.0 425 25.9
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.2e-16 91.7 611 24.4
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 5.5e-16 90.9 198 33.8
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.2e-16 90.5 349 28.1
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 7.2e-16 90.5 239 30.1
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.6e-15 89.4 351 28.5
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.1e-15 89.0 631 23.6
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.7e-15 88.6 233 31.8
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.7e-15 88.6 445 25.4
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.6e-15 88.2 370 28.6
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.6e-15 87.8 351 28.5
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 7.9e-15 87.0 470 25.7
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.4e-14 86.3 512 24.0
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.4e-14 86.3 349 25.5
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.4e-14 86.3 197 32.5
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 3.0e-14 85.1 332 25.6
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.9e-14 84.7 503 24.3
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 5.1e-14 84.3 197 28.4
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.1e-14 84.3 336 26.5
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 6.7e-14 84.0 274 29.2
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.7e-14 84.0 268 29.1
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 8.8e-14 83.6 247 26.7
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.1e-13 83.2 245 30.2
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.5e-13 82.8 204 30.4
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.5e-13 82.0 189 30.2
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 2.5e-13 82.0 335 27.8
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.5e-13 82.0 193 31.6
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.3e-13 81.3 238 28.6
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 4.3e-13 81.3 336 27.4
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 7.4e-13 80.5 252 28.6
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 7.4e-13 80.5 443 26.2
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 7.4e-13 80.5 258 28.7
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 2.2e-12 79.0 350 25.7
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 2.2e-12 79.0 194 33.0
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.2e-12 79.0 281 29.9
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.8e-12 78.6 239 28.0
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.7e-12 78.2 220 28.2
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.8e-12 77.8 220 28.2
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 6.3e-12 77.4 196 32.7
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 6.3e-12 77.4 492 25.0
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 6.3e-12 77.4 206 31.6
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 6.3e-12 77.4 511 23.7
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.2e-12 77.0 208 30.8
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.1e-11 76.6 204 30.4
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.4e-11 76.3 385 24.7
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.8e-11 75.9 338 24.6
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.8e-11 75.9 359 27.0
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.8e-11 75.9 233 27.5
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.4e-11 75.5 242 27.7
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 2.4e-11 75.5 197 27.9
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 3.1e-11 75.1 200 27.0
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 4.1e-11 74.7 296 27.4
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.1e-11 74.7 268 28.4
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 5.3e-11 74.3 199 31.2
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 5.3e-11 74.3 258 27.9
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.3e-11 74.3 317 25.2
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.9e-11 73.9 88 46.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 9.1e-11 73.6 331 26.9
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.2e-10 73.2 244 26.6
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.2e-10 73.2 259 28.2
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.5e-10 72.8 331 24.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.5e-10 72.8 182 31.9
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.5e-10 72.8 309 26.2
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.5e-10 72.8 169 30.8
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.0e-10 72.4 438 24.7
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.0e-09 70.1 429 24.9
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.7e-09 69.3 247 25.9
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.2e-09 68.9 300 24.7
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 2.2e-09 68.9 315 25.4
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 5.0e-09 67.8 133 36.8
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 6.5e-09 67.4 364 23.6
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 6.5e-09 67.4 208 29.8
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 8.5e-09 67.0 264 25.0
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 8.5e-09 67.0 348 23.9
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-08 66.6 415 24.8
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-08 66.6 415 24.8
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.9e-08 65.9 254 27.6
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.5e-08 65.5 245 26.9
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.5e-08 65.5 368 22.8
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 4.2e-08 64.7 177 27.7
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.2e-08 63.9 193 29.0
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.6e-07 62.8 193 27.5
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 4.7e-07 61.2 202 28.2
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.4e-06 59.7 282 23.8
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.8e-06 59.3 204 26.0
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.0e-06 58.5 262 26.7
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 8.8e-06 57.0 425 24.0


User provided reference genes

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