Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 0.0e+00 1091.3 563 100.0
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.3e-300 1035.8 563 94.3
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 9.0e-291 1003.0 564 91.3
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.8e-284 981.5 565 88.0
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 7.2e-272 940.3 575 83.5
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 2.1e-271 938.7 573 83.6
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 2.7e-271 938.3 573 83.4
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 2.3e-270 935.3 563 86.1
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.8e-267 925.6 564 83.7
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.4e-251 872.8 556 80.9
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-246 856.7 556 80.0
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 7.2e-240 833.9 561 73.4
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.6e-239 831.6 561 72.7
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.5e-237 826.2 561 74.7
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.0e-237 825.9 558 77.2
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.4e-235 819.7 561 76.3
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.7e-234 815.5 555 73.3
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.5e-232 808.9 567 70.0
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.3e-225 785.8 560 72.3
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 4.7e-223 778.1 565 69.6
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 3.9e-217 758.4 564 72.7
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 3.6e-215 751.9 568 71.1
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 9.8e-213 743.8 564 71.1
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 8.3e-212 740.7 581 69.2
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.7e-210 735.7 570 70.4
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 3.5e-210 735.3 564 70.4
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 3.0e-193 679.1 558 66.5
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 3.9e-177 625.5 587 53.3
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.1e-162 576.6 584 50.3
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.9e-158 561.6 566 49.3
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 3.4e-157 559.3 593 48.1
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.9e-156 556.2 570 50.2
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.9e-155 553.5 603 49.1
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 4.2e-155 552.4 598 47.8
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.3e-153 546.6 574 49.7
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 5.1e-153 545.4 591 48.9
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.5e-152 543.9 592 47.3
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.5e-152 543.9 563 51.5
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.5e-152 543.1 604 46.9
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.3e-152 542.7 568 50.5
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 4.3e-152 542.3 589 50.6
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 7.4e-152 541.6 652 44.6
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.4e-152 541.6 584 46.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.7e-151 540.4 561 50.8
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 3.7e-151 539.3 599 50.8
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 9.1e-150 534.6 569 47.8
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 3.4e-149 532.7 574 47.4
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.3e-148 530.8 607 48.6
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.3e-148 530.8 575 48.5
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 9.4e-147 524.6 592 47.0
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 1.4e-145 520.8 591 46.2
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 6.7e-145 518.5 610 46.7
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.3e-143 514.2 569 45.7
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.3e-143 511.9 582 45.5
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 5.3e-142 508.8 566 47.0
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 3.5e-141 506.1 564 46.5
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 4.5e-141 505.8 404 62.9
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 5.9e-141 505.4 588 45.1
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.3e-140 504.2 571 46.1
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 6.5e-140 501.9 583 48.4
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.9e-139 500.4 611 47.1
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.6e-138 497.3 457 53.6
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 6.1e-138 495.4 576 48.4
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 6.7e-137 491.9 286 87.8
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 2.2e-135 486.9 606 46.9
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 7.0e-134 481.9 624 43.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 7.0e-134 481.9 554 45.7
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 7.0e-134 481.9 586 45.4
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 9.1e-134 481.5 564 45.4
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 4.5e-133 479.2 604 45.7
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 5.9e-133 478.8 626 43.6
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 1.7e-132 477.2 582 45.4
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 8.5e-132 474.9 601 43.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 2.7e-130 469.9 586 44.2
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.6e-130 469.5 595 43.9
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.4e-129 467.6 650 43.7
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 8.8e-129 464.9 611 46.0
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.8e-129 464.9 586 43.3
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 3.4e-128 463.0 632 43.0
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 5.4e-126 455.7 476 47.5
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 3.8e-124 449.5 606 41.1
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.5e-124 448.7 468 47.4
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.1e-123 448.0 565 45.1
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.2e-123 446.4 468 47.4
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 7.2e-123 445.3 471 46.3
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 6.1e-122 442.2 612 42.3
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 3.0e-121 439.9 573 41.4
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.0e-121 439.9 617 42.3
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.3e-119 432.2 475 45.9
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 4.1e-118 429.5 614 41.9
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.1e-118 429.5 614 41.9
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.6e-117 427.6 655 40.2
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.3e-115 419.9 665 37.1
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 4.0e-113 412.9 225 90.2
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.4e-112 409.8 423 47.0
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 7.5e-112 408.7 497 42.7
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 9.8e-112 408.3 439 49.7
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 7.0e-110 402.1 295 68.1
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.9e-107 394.0 564 42.4
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.9e-107 394.0 568 39.8
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.2e-106 391.3 607 38.7
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-105 388.3 292 68.5
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.9e-103 380.2 565 40.4
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.6e-101 372.9 482 42.7
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.0e-100 371.7 575 41.4
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.3e-100 371.3 495 41.2
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.3e-95 354.8 443 44.5
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.9e-91 340.9 476 43.5
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.4e-89 334.7 459 38.3
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 6.8e-89 332.4 423 39.7
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 8.9e-89 332.0 688 34.9
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.6e-85 321.2 340 46.5
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.0e-84 318.5 505 36.2
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 2.1e-82 310.8 428 40.0
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 8.1e-82 308.9 349 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 2.4e-81 307.4 453 36.9
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.0e-81 306.6 346 45.4
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.6e-77 294.7 313 46.6
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.4e-73 281.6 354 44.1
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.0e-68 265.4 319 45.1
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.0e-68 263.8 263 48.7
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.4e-62 245.0 237 53.2
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 2.3e-60 237.7 232 48.3
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 2.4e-57 227.6 344 39.5
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.4e-57 227.6 242 48.3
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.9e-51 208.0 267 41.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 2.1e-50 204.5 273 42.5
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.0e-48 198.0 233 43.8
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.3e-47 195.3 158 55.7
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 2.9e-47 194.1 132 65.2
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.2e-46 190.7 254 48.0
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 7.9e-45 186.0 235 43.4
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.0e-40 171.4 251 41.4
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.9e-40 169.9 308 34.4
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.9e-38 164.9 147 55.1
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 2.1e-37 161.4 397 33.0
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 3.8e-31 140.6 245 43.3
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 3.6e-29 134.0 186 40.3
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.1e-29 133.3 182 39.0
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 7.9e-29 132.9 164 40.9
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-28 131.3 182 39.0
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.9e-28 130.6 102 58.8
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.8e-28 129.4 182 37.9
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 2.0e-27 128.3 183 39.3
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-26 125.2 182 37.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-26 125.2 182 37.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-26 125.2 182 37.4
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.4e-25 122.1 396 24.7
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 2.6e-24 117.9 128 49.2
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 6.5e-23 113.2 251 32.3
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-22 112.5 104 51.0
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.5e-22 112.1 111 49.5
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.5e-22 112.1 196 35.7
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.2e-22 110.9 235 39.6
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 5.5e-22 110.2 97 52.6
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 8.0e-21 106.3 129 43.4
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-20 105.5 103 49.5
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 2.6e-19 101.3 65 72.3
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-17 95.1 107 41.1
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.0e-16 91.7 185 32.4
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.7e-16 91.3 82 47.6
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.2e-14 84.0 69 50.7
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.6e-13 80.9 194 43.8
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 8.0e-13 79.7 83 45.8
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 8.8e-12 76.3 78 47.4
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.2e-11 75.9 263 32.3
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 9.8e-11 72.8 97 46.4
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 9.8e-11 72.8 172 35.5
BolC8t48198H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-09 68.9 35 85.7
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.8e-09 68.6 43 69.8
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.1e-09 67.8 200 35.0
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 2.0e-08 65.1 102 42.2
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 5.9e-08 63.5 50 60.0
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.5e-06 58.2 47 59.6
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 9.5e-06 56.2 81 40.7


User provided reference genes

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