Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.5e-292 1008.8 522 100.0
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 8.7e-285 983.0 522 97.5
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 4.1e-274 947.6 524 93.1
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 6.5e-256 887.1 523 86.8
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 9.1e-250 866.7 523 84.5
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.7e-240 835.9 540 81.7
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 4.3e-239 831.2 520 81.3
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 9.5e-239 830.1 524 81.3
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 9.5e-239 830.1 524 81.3
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.2e-238 829.7 524 81.3
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 5.4e-234 814.3 525 81.5
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.7e-233 812.0 524 79.8
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 2.3e-232 808.9 524 79.4
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.9e-231 805.8 523 80.9
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 2.4e-218 762.3 527 75.3
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 8.1e-198 694.1 534 67.8
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 3.4e-188 662.1 533 67.4
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 8.3e-142 508.1 539 50.5
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.5e-138 497.3 558 49.1
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.5e-138 496.5 534 49.4
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 2.7e-137 493.0 538 51.5
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 3.4e-135 486.1 562 49.5
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.7e-134 483.8 537 51.0
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.7e-132 476.5 529 47.3
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.5e-132 476.1 533 49.9
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 7.7e-132 474.9 533 49.9
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 1.7e-131 473.8 532 48.5
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.6e-131 471.9 533 49.7
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.5e-130 470.7 533 47.7
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 5.7e-127 458.8 548 47.6
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 3.1e-125 453.0 535 47.3
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.2e-124 451.1 548 46.4
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 2.0e-124 450.3 535 47.1
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 2.0e-124 450.3 541 48.2
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 5.0e-123 445.7 528 47.0
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.1e-122 444.5 541 46.6
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.1e-122 444.5 532 46.8
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 4.3e-122 442.6 525 46.7
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.6e-121 440.7 535 45.8
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.1e-121 440.3 535 45.6
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.4e-120 437.6 538 45.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.4e-120 437.6 528 47.0
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 5.2e-120 435.6 536 46.6
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 5.2e-120 435.6 556 45.3
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 3.4e-119 433.0 533 45.4
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 7.5e-119 431.8 533 45.0
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.9e-117 427.2 530 44.7
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 1.2e-116 424.5 527 44.6
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.6e-116 424.1 528 45.8
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 2.0e-116 423.7 531 44.3
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 6.0e-116 422.2 568 43.7
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.0e-115 421.4 541 45.1
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 2.3e-115 420.2 537 44.9
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 3.9e-115 419.5 531 42.6
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.6e-115 418.7 540 43.5
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.9e-114 417.2 533 44.1
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.5e-114 414.8 545 44.6
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-113 414.5 545 44.4
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-113 414.5 545 44.6
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.1e-113 413.7 548 44.5
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.2e-113 412.1 547 43.7
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.4e-112 411.0 526 44.7
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 5.2e-112 409.1 514 44.9
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.7e-110 404.1 528 44.7
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 4.9e-110 402.5 525 44.4
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.1e-109 401.4 541 41.8
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.1e-109 401.4 562 43.1
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.4e-109 401.0 615 40.0
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.4e-109 401.0 528 43.6
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.9e-109 400.6 551 42.8
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.4e-109 400.2 533 43.5
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 2.1e-108 397.1 548 42.9
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.1e-106 391.3 528 41.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 2.5e-106 390.2 536 42.9
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 7.3e-106 388.7 535 42.4
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 9.5e-106 388.3 535 42.6
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.6e-105 387.5 533 43.3
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 2.1e-105 387.1 524 44.1
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.6e-105 386.3 538 41.1
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.1e-104 384.8 532 42.3
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 9.9e-103 378.3 527 41.2
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.2e-102 377.1 558 41.8
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 2.9e-102 376.7 531 40.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 3.7e-102 376.3 536 40.7
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 8.3e-102 375.2 539 40.6
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 4.1e-101 372.9 443 45.1
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 4.1e-101 372.9 535 40.9
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 7.1e-101 372.1 539 40.8
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 2.1e-100 370.5 537 40.4
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.7e-99 367.5 542 40.6
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 3.0e-99 366.7 439 47.2
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.9e-99 366.3 537 42.1
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 8.6e-99 365.2 531 42.4
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.5e-98 363.6 531 42.2
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.1e-97 360.5 538 40.7
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 2.8e-97 360.1 484 43.8
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 6.8e-96 355.5 518 40.9
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.1e-92 344.0 539 39.7
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.3e-91 341.3 536 39.6
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.3e-89 334.7 526 40.7
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 8.1e-89 332.0 419 45.3
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.9e-88 328.9 513 39.6
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 9.9e-87 325.1 536 37.3
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 4.2e-85 319.7 390 46.9
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 6.6e-83 312.4 526 37.8
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.5e-82 311.2 683 33.4
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 9.6e-82 308.5 395 45.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.3e-81 308.1 549 37.3
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.6e-81 307.8 541 37.5
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.1e-80 305.1 536 35.4
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.4e-80 304.7 549 36.6
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.6e-76 291.2 552 34.4
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 2.8e-73 280.4 337 46.3
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.1e-72 278.5 552 33.7
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 5.5e-69 266.2 534 34.8
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 4.6e-68 263.1 535 35.0
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 4.8e-65 253.1 467 36.8
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 1.5e-63 248.1 393 40.2
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.0e-62 243.0 349 39.3
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.6e-60 238.0 280 46.8
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.9e-58 231.1 218 59.2
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 1.3e-57 228.4 153 73.9
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 4.8e-57 226.5 153 73.9
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.4e-56 224.9 443 35.9
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 2.6e-55 220.7 148 73.6
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 1.7e-54 218.0 279 44.1
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 6.1e-52 209.5 221 50.7
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 8.8e-51 205.7 350 37.7
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.8e-49 199.9 489 31.9
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.3e-46 191.8 267 39.7
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 5.5e-45 186.4 260 39.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.0e-43 182.2 339 37.5
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 8.8e-43 179.1 271 44.6
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 8.8e-35 152.5 300 34.7
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.3e-33 148.7 170 47.1
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 5.0e-30 136.7 157 46.5
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 1.8e-27 128.3 331 33.8
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 4.8e-25 120.2 164 40.2
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.1e-24 119.0 534 24.3
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 7.7e-23 112.8 653 23.6
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.0e-22 112.5 218 31.2
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 2.5e-21 107.8 146 39.0
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 4.2e-21 107.1 172 38.4
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 9.4e-21 105.9 178 35.4
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 2.2e-17 94.7 252 30.2
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 6.6e-14 83.2 133 37.6
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.7e-06 58.5 173 30.6


User provided reference genes

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