Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G26560 Arabidopsis lyrata HOM05D003318 ORTHO05D079812 1.9e-72 275.8 142 100.0
AL3G45690 Arabidopsis lyrata HOM05D005872 ORTHO05D080292 1.8e-14 83.2 42 97.6
COL.COLO4_30076 Corchorus olitorius HOM05D003318 ORTHO05D004544 1.6e-10 70.1 47 76.6
AL6G29090 Arabidopsis lyrata HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
AT5G17990 Arabidopsis thaliana HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
BcaB08g36721 Brassica carinata HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
BcaC04g18737 Brassica carinata HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
A10p21530 Brassica napus HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
C09p59000 Brassica napus HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
BolC9t58746H Brassica oleracea HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
BraA02t05423Z Brassica rapa HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
BraA10t44214Z Brassica rapa HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
Carub.0006s1618 Capsella rubella HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
CARHR195080 Cardamine hirsuta HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
Thhalv10013530m.g Eutrema salsugineum HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
Sp6g26300 Schrenkiella parvula HOM05D003318 ORTHO05D004544 2.7e-10 69.3 38 94.7
SGA_v2.0_scaffold90G27893 Striga asiatica HOM05D003318 ORTHO05D004544 2.7e-10 69.3 71 59.2
Gohir.A12G275200 Gossypium hirsutum HOM05D003318 ORTHO05D004544 3.5e-10 68.9 47 78.7
Gohir.D12G275900 Gossypium hirsutum HOM05D003318 ORTHO05D004544 3.5e-10 68.9 73 58.9
Gorai.008G296400 Gossypium raimondii HOM05D003318 ORTHO05D004544 3.5e-10 68.9 73 58.9
QL08p043380 Quercus lobata HOM05D003318 ORTHO05D004544 4.5e-10 68.6 64 62.5
Aa31LG11G11520 Aethionema arabicum HOM05D003318 ORTHO05D004544 5.9e-10 68.2 38 92.1
CARHR154460 Cardamine hirsuta HOM05D003318 ORTHO05D011024 5.9e-10 68.2 42 83.3
Cfa019115 Carpinus fangiana HOM05D003318 ORTHO05D004544 5.9e-10 68.2 38 92.1
Cfa019154 Carpinus fangiana HOM05D003318 ORTHO05D004544 5.9e-10 68.2 38 92.1
Haze_07523 Corylus avellana HOM05D003318 ORTHO05D004544 5.9e-10 68.2 38 92.1
Potri.012G082700 Populus trichocarpa HOM05D003318 ORTHO05D004544 5.9e-10 68.2 38 92.1
BcaC03g13562 Brassica carinata HOM05D003318 ORTHO05D004544 7.8e-10 67.8 38 92.1
A02p04620 Brassica napus HOM05D003318 ORTHO05D004544 7.8e-10 67.8 38 92.1
C02p09560 Brassica napus HOM05D003318 ORTHO05D004544 7.8e-10 67.8 38 92.1
BolC2t06863H Brassica oleracea HOM05D003318 ORTHO05D004544 7.8e-10 67.8 38 92.1
CDE07G1695 Ceratophyllum demersum HOM05D003318 ORTHO05D004544 7.8e-10 67.8 43 81.4
Manes.06G106300 Manihot esculenta HOM05D003318 ORTHO05D004544 1.0e-09 67.4 64 60.9
Duzib205G1868 Durio zibethinus HOM05D003318 ORTHO05D004544 1.3e-09 67.0 47 74.5
SGA_v2.0_scaffold116G32230 Striga asiatica HOM05D003318 ORTHO05D004544 1.3e-09 67.0 65 60.0
Thecc.03G014800 Theobroma cacao HOM05D003318 ORTHO05D004544 1.3e-09 67.0 47 74.5
unitig_61.g26476 Utricularia gibba HOM05D003318 ORTHO05D004544 1.3e-09 67.0 38 92.1
CiPaw.12G028100 Carya illinoinensis HOM05D003318 ORTHO05D004544 1.7e-09 66.6 38 89.5
Ca_16165_v3 Cicer arietinum L. HOM05D003318 ORTHO05D004544 1.7e-09 66.6 38 89.5
ECA247G3283 Erigeron canadensis HOM05D003318 ORTHO05D004544 1.7e-09 66.6 38 92.1
Migut.O00115 Erythranthe guttata HOM05D003318 ORTHO05D004544 1.7e-09 66.6 38 89.5
Sabra12G0059400 Salix brachista HOM05D003318 ORTHO05D004544 1.7e-09 66.6 38 89.5
AL3G45680 Arabidopsis lyrata HOM05D003318 ORTHO05D004544 2.3e-09 66.2 37 91.9
Medtr3g077590 Medicago truncatula HOM05D003318 ORTHO05D004544 2.3e-09 66.2 38 89.5
RcHm_v2.0_Chr7g0193331 Rosa chinensis HOM05D003318 ORTHO05D004544 2.3e-09 66.2 64 62.5
MSTRG.23140 Avicennia marina HOM05D003318 ORTHO05D004544 2.9e-09 65.9 38 89.5
EL10Ac5g10728 Beta vulgaris HOM05D003318 ORTHO05D004544 2.9e-09 65.9 38 89.5
BcaB04g17330 Brassica carinata HOM05D003318 ORTHO05D011024 2.9e-09 65.9 37 91.9
Nitab4.5_0000514g0090 Nicotiana tabacum HOM05D003318 ORTHO05D011024 2.9e-09 65.9 54 64.8
Nitab4.5_0002306g0030 Nicotiana tabacum HOM05D003318 ORTHO05D004544 2.9e-09 65.9 40 85.0
Oeu016410.1 Olea europaea HOM05D003318 ORTHO05D004544 2.9e-09 65.9 38 89.5
CAN.G1166.8 Capsicum annuum HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
CAN.G2085.3 Capsicum annuum HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Ciclev10020016m.g Citrus clementina HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
FvH4_5g05490 Fragaria vesca HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
FAN04G1614 Fragaria x ananassa HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
FAN18G0002 Fragaria x ananassa HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
HanXRQChr09g0251391 Helianthus annuus HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Hma1.2p1_0592F.1_g185485 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Hma1.2p1_2568F.1_g324540 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Lsat_1_v5_gn_1_28341 Lactuca sativa HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Nitab4.5_0000003g0690 Nicotiana tabacum HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Nitab4.5_0006198g0010 Nicotiana tabacum HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Peaxi162Scf00689g00118 Petunia axillaris HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
QL11p012704 Quercus lobata HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
RcHm_v2.0_Chr6g0263061 Rosa chinensis HOM05D003318 ORTHO05D004544 3.8e-09 65.5 64 62.5
RcHm_v2.0_Chr6g0263081 Rosa chinensis HOM05D003318 ORTHO05D004544 3.8e-09 65.5 64 62.5
Solyc06g071550.3 Solanum lycopersicum HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Sopen06g027840 Solanum pennellii HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
PGSC0003DMG402027084 Solanum tuberosum HOM05D003318 ORTHO05D004544 3.8e-09 65.5 38 89.5
Aa31LG5G14350 Aethionema arabicum HOM05D003318 ORTHO05D004544 5.0e-09 65.1 38 89.5
CANSAT80G1582 Cannabis sativa HOM05D003318 ORTHO05D004544 5.0e-09 65.1 38 86.8
FAN18G0175 Fragaria x ananassa HOM05D003318 ORTHO05D004544 5.0e-09 65.1 38 86.8
Lj1g0000906 Lotus japonicus HOM05D003318 ORTHO05D004544 5.0e-09 65.1 38 86.8
Oeu023437.2 Olea europaea HOM05D003318 ORTHO05D004544 5.0e-09 65.1 38 86.8
PGR083G1815 Punica granatum HOM05D003318 ORTHO05D004544 5.0e-09 65.1 38 86.8
Sabra15G0103300 Salix brachista HOM05D003318 ORTHO05D004544 5.0e-09 65.1 38 86.8
MELO3C002275.2 Cucumis melo HOM05D003318 ORTHO05D004544 6.6e-09 64.7 38 86.8
CsaV3_1G008610 Cucumis sativus L. HOM05D003318 ORTHO05D004544 6.6e-09 64.7 38 86.8
SHI00282 Sapria himalayana HOM05D003318 ORTHO05D004544 6.6e-09 64.7 38 86.8
Sed0002340 Sechium edule HOM05D003318 ORTHO05D004544 6.6e-09 64.7 38 86.8
Sed0012780 Sechium edule HOM05D003318 ORTHO05D004544 6.6e-09 64.7 38 86.8
ATR1091G089 Amborella trichopoda HOM05D003318 ORTHO05D004544 8.6e-09 64.3 38 86.8
CiPaw.11G024300 Carya illinoinensis HOM05D003318 ORTHO05D004544 8.6e-09 64.3 38 86.8
Dinv38569 Davidia involucrata HOM05D003318 ORTHO05D004544 8.6e-09 64.3 38 86.8
Nitab4.5_0001659g0170 Nicotiana tabacum HOM05D003318 ORTHO05D004544 8.6e-09 64.3 38 86.8
Nitab4.5_0002643g0020 Nicotiana tabacum HOM05D003318 ORTHO05D004544 8.6e-09 64.3 38 86.8
RcHm_v2.0_Chr6g0263071 Rosa chinensis HOM05D003318 ORTHO05D004544 8.6e-09 64.3 102 46.1
Hund02756 Selenicereus undatus HOM05D003318 ORTHO05D004544 8.6e-09 64.3 38 86.8
Cc04_g12170 Coffea canephora HOM05D003318 ORTHO05D004544 1.1e-08 63.9 38 86.8
Eucgr.B00293 Eucalyptus grandis HOM05D003318 ORTHO05D004544 1.1e-08 63.9 38 84.2
Lj5A126T76 Lonicera japonica HOM05D003318 ORTHO05D004544 1.1e-08 63.9 38 86.8
Peaxi162Scf00700g00534 Petunia axillaris HOM05D003318 ORTHO05D004544 1.1e-08 63.9 38 84.2
TWI14G1066 Tripterygium wilfordii HOM05D003318 ORTHO05D004544 1.1e-08 63.9 37 89.2
GSVIVG01007720001 Vitis vinifera HOM05D003318 ORTHO05D004544 1.1e-08 63.9 38 86.8
Ah.02g110590 Amaranthus hybridus HOM05D003318 ORTHO05D004544 1.5e-08 63.5 38 86.8
Prupe.5G171400 Prunus persica HOM05D003318 ORTHO05D004544 1.5e-08 63.5 64 59.4
GSVIVG01032439001 Vitis vinifera HOM05D003318 ORTHO05D004544 1.5e-08 63.5 64 59.4
Actinidia04733 Actinidia chinensis HOM05D003318 ORTHO05D011024 1.9e-08 63.2 38 86.8
arahy.Tifrunner.gnm1.ann1.GNW9LV Arachis hypogaea HOM05D003318 ORTHO05D004544 1.9e-08 63.2 38 84.2
arahy.Tifrunner.gnm1.ann1.XU68ZZ Arachis hypogaea HOM05D003318 ORTHO05D004544 1.9e-08 63.2 38 84.2
BcaB05g23318 Brassica carinata HOM05D003318 ORTHO05D004544 1.9e-08 63.2 39 89.7
ClCG01G013250 Citrullus lanatus HOM05D003318 ORTHO05D004544 1.9e-08 63.2 38 81.6
SalBow5G2274 Salvia bowleyana HOM05D003318 ORTHO05D004544 1.9e-08 63.2 38 86.8
Solyc12g035190.2 Solanum lycopersicum HOM05D003318 ORTHO05D004544 1.9e-08 63.2 38 84.2
Sopen12g014750 Solanum pennellii HOM05D003318 ORTHO05D004544 1.9e-08 63.2 38 84.2
Atru.chr9.2499 Acer truncatum HOM05D003318 ORTHO05D004544 2.5e-08 62.8 38 84.2
DCAR_016479 Daucus carota HOM05D003318 ORTHO05D004544 2.5e-08 62.8 38 84.2
Glyma.04G184900 Glycine max HOM05D003318 ORTHO05D004544 2.5e-08 62.8 38 84.2
Hma1.2p1_0993F.1_g245293 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 2.5e-08 62.8 38 81.6
Hma1.2p1_0999F.1_g246340 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 2.5e-08 62.8 38 81.6
Lsat_1_v5_gn_4_183240 Lactuca sativa HOM05D003318 ORTHO05D004544 2.5e-08 62.8 38 78.9
PGSC0003DMG400031392 Solanum tuberosum HOM05D003318 ORTHO05D004544 2.5e-08 62.8 38 84.2
EL10Ac8g19201 Beta vulgaris HOM05D003318 ORTHO05D011024 3.3e-08 62.4 67 55.2
CDE06G1481 Ceratophyllum demersum HOM05D003318 ORTHO05D004544 3.3e-08 62.4 39 84.6
Dinv20635 Davidia involucrata HOM05D003318 ORTHO05D004544 3.3e-08 62.4 38 84.2
MD06G1172000 Malus domestica HOM05D003318 ORTHO05D004544 3.3e-08 62.4 64 59.4
Psat0ss3962g0480 Pisum sativum HOM05D003318 ORTHO05D004544 3.3e-08 62.4 38 84.2
VMungo1309G2893 Vigna mungo HOM05D003318 ORTHO05D004544 3.3e-08 62.4 38 81.6
HanXRQChr09g0254931 Helianthus annuus HOM05D003318 ORTHO05D004544 4.3e-08 62.0 35 88.6
THA.LOC104820782 Tarenaya hassleriana HOM05D003318 ORTHO05D004544 4.3e-08 62.0 38 84.2
TAR629G1623 Trochodendron aralioides HOM05D003318 ORTHO05D004544 4.3e-08 62.0 38 84.2
Actinidia33079 Actinidia chinensis HOM05D003318 ORTHO05D004544 5.6e-08 61.6 35 88.6
Actinidia36099 Actinidia chinensis HOM05D003318 ORTHO05D004544 5.6e-08 61.6 38 81.6
DCAR_021707 Daucus carota HOM05D003318 ORTHO05D004544 5.6e-08 61.6 38 81.6
Migut.H00094 Erythranthe guttata HOM05D003318 ORTHO05D004544 5.6e-08 61.6 38 81.6
Lj7A595G62 Lonicera japonica HOM05D003318 ORTHO05D004544 5.6e-08 61.6 38 81.6
SEGI_31346 Sequoiadendron giganteum HOM05D003318 ORTHO05D004544 5.6e-08 61.6 38 78.9
MSTRG.11467 Avicennia marina HOM05D003318 ORTHO05D004544 7.3e-08 61.2 38 84.2
CSS0041520 Camellia sinensis var. sinensis HOM05D003318 ORTHO05D004544 7.3e-08 61.2 35 85.7
Dinv33471 Davidia involucrata HOM05D003318 ORTHO05D004544 7.3e-08 61.2 38 78.9
MBI10_g27994_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 7.3e-08 61.2 38 84.2
MD14G1177900 Malus domestica HOM05D003318 ORTHO05D004544 7.3e-08 61.2 38 81.6
Phvul.009G177200 Phaseolus vulgaris HOM05D003318 ORTHO05D004544 7.3e-08 61.2 38 81.6
Rhsim08G0174000 Rhododendron simsii HOM05D003318 ORTHO05D004544 7.3e-08 61.2 61 60.7
Lalb_Chr08g0236611 Lupinus albus HOM05D003318 ORTHO05D004544 9.5e-08 60.8 38 81.6
MBI10_g40111_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 9.5e-08 60.8 68 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2078 Anthoceros agrestis HOM05D003318 ORTHO05D004544 1.2e-07 60.5 40 75.0
SalBow1G7854 Salvia bowleyana HOM05D003318 ORTHO05D004544 1.2e-07 60.5 38 81.6
Sc04g0001710 Simmondsia chinensis HOM05D003318 ORTHO05D004544 1.2e-07 60.5 38 84.2
Os03g0126000 Oryza sativa ssp. japonica HOM05D003318 ORTHO05D004544 1.6e-07 60.1 38 84.2
Rhsim10G0019100 Rhododendron simsii HOM05D003318 ORTHO05D004544 1.6e-07 60.1 35 85.7
Zm00001eb403640 Zea mays HOM05D003318 ORTHO05D004544 1.6e-07 60.1 38 84.2
Ah.11g051490 Amaranthus hybridus HOM05D003318 ORTHO05D004544 2.1e-07 59.7 38 84.2
Cpa.g.sc928.1 Carica papaya HOM05D003318 ORTHO05D004544 2.1e-07 59.7 38 81.6
Cc07_g01950 Coffea canephora HOM05D003318 ORTHO05D004544 2.1e-07 59.7 37 81.1
SGA_v2.0_scaffold481G52331 Striga asiatica HOM05D003318 ORTHO05D004544 2.1e-07 59.7 38 81.6
ECA232G1375 Erigeron canadensis HOM05D003318 ORTHO05D004544 2.8e-07 59.3 38 76.3
Nn3g16817 Nelumbo nucifera HOM05D003318 ORTHO05D004544 2.8e-07 59.3 35 88.6
TAR374G0007 Trochodendron aralioides HOM05D003318 ORTHO05D004544 2.8e-07 59.3 38 81.6
TAR622G0444 Trochodendron aralioides HOM05D003318 ORTHO05D004544 2.8e-07 59.3 38 78.9
vmacro19403 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 2.8e-07 59.3 33 90.9
Aqoxy248s001 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 4.7e-07 58.5 38 81.6
Aqoxy3G01070 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 4.7e-07 58.5 38 81.6
Dinv35091 Davidia involucrata HOM05D003318 ORTHO05D004544 4.7e-07 58.5 38 76.3
HPP92_007429 Vanilla planifolia HOM05D003318 ORTHO05D004544 6.1e-07 58.2 38 76.3
Mapoly0027s0124 Marchantia polymorpha HOM05D003318 ORTHO05D004544 8.0e-07 57.8 34 85.3
PSO017G3133 Papaver somniferum HOM05D003318 ORTHO05D004544 8.0e-07 57.8 38 81.6
PSO478G3254 Papaver somniferum HOM05D003318 ORTHO05D004544 8.0e-07 57.8 38 81.6
Pp3c17_16690 Physcomitrium patens HOM05D003318 ORTHO05D004544 8.0e-07 57.8 34 85.3
vmacro05848 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 8.0e-07 57.8 34 88.2
Nn4g22710 Nelumbo nucifera HOM05D003318 ORTHO05D004544 1.0e-06 57.4 35 85.7
MSTRG.24028 Avicennia marina HOM05D003318 ORTHO05D004544 3.0e-06 55.8 38 76.3
MBI16_g39220_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 4.0e-06 55.5 38 73.7
MBI11_g46356_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D011024 8.9e-06 54.3 38 73.7


User provided reference genes

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