Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.8e-233 811.6 420 100.0
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 3.9e-166 588.6 384 81.2
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.5e-165 586.6 384 81.5
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 3.1e-163 578.9 384 81.0
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 4.0e-163 578.6 384 79.9
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-160 570.5 384 79.4
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-160 569.7 384 79.7
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.9e-160 569.7 384 79.7
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.6e-159 566.6 384 78.9
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.6e-159 566.6 384 78.9
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.5e-157 560.1 384 77.6
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 5.6e-157 558.1 384 77.3
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 5.6e-157 558.1 384 77.3
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 9.5e-157 557.4 384 77.1
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.6e-156 556.6 384 76.8
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 3.6e-156 555.4 385 77.4
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 6.0e-151 538.1 398 73.9
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 3.1e-139 499.2 429 65.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.7e-129 466.8 325 77.5
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 3.7e-124 449.1 365 66.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.1e-123 447.6 366 65.0
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 9.0e-123 444.5 365 63.8
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.6e-122 443.0 363 64.7
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.1e-120 437.6 372 62.4
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.2e-120 435.6 372 62.1
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.6e-119 433.7 361 63.7
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.1e-119 433.3 372 62.9
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 3.5e-119 432.6 365 62.5
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 4.6e-119 432.2 369 61.2
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 6.0e-119 431.8 359 63.5
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 7.9e-119 431.4 371 61.7
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.8e-118 430.3 365 63.6
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.8e-118 430.3 361 62.9
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 2.3e-118 429.9 365 62.5
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.1e-118 428.7 365 61.1
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.7e-118 428.3 365 62.2
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 6.7e-118 428.3 357 63.0
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.5e-117 427.2 365 62.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.5e-117 427.2 366 62.3
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.9e-117 426.8 365 61.6
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.9e-117 426.8 365 62.2
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 2.5e-117 426.4 361 62.6
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 2.5e-117 426.4 357 62.7
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 3.3e-117 426.0 366 61.5
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 4.3e-117 425.6 365 62.2
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 4.3e-117 425.6 365 60.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 4.3e-117 425.6 361 62.9
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 5.7e-117 425.2 357 63.0
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 7.4e-117 424.9 372 61.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.6e-116 423.7 365 61.4
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 2.2e-116 423.3 353 63.5
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 2.8e-116 422.9 365 61.4
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 3.7e-116 422.5 372 59.4
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 4.8e-116 422.2 365 63.3
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 1.1e-115 421.0 369 60.4
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.1e-115 421.0 365 61.6
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-115 419.5 372 62.6
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 5.3e-115 418.7 370 61.1
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.2e-114 417.5 353 61.8
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.5e-114 417.2 365 59.7
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 2.6e-114 416.4 373 59.5
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.4e-114 416.0 372 62.1
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 5.9e-114 415.2 360 60.6
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 7.6e-114 414.8 365 59.5
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 7.6e-114 414.8 371 58.5
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.3e-113 414.1 369 59.6
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.3e-113 414.1 360 61.7
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.9e-113 412.9 369 59.3
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.8e-113 412.5 372 61.6
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 8.5e-113 411.4 365 59.5
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 8.5e-113 411.4 362 61.9
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 8.5e-113 411.4 362 61.9
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.1e-112 411.0 353 60.9
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.5e-112 408.7 369 62.1
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 5.5e-112 408.7 401 56.9
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 9.3e-112 407.9 369 59.6
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.6e-111 407.1 369 61.0
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.1e-111 406.8 365 61.1
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.7e-111 406.4 389 56.3
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 6.1e-111 405.2 357 58.5
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 3.0e-110 402.9 361 60.4
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 6.7e-110 401.7 355 60.8
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 6.7e-110 401.7 380 58.4
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.9e-109 400.2 365 58.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 6.3e-108 395.2 353 59.2
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 8.2e-108 394.8 361 59.6
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.4e-107 394.0 370 57.3
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 2.4e-107 393.3 359 61.3
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.4e-107 393.3 360 60.0
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 3.1e-107 392.9 370 57.0
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 9.1e-107 391.3 355 60.6
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.5e-106 390.6 355 60.3
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.5e-106 390.6 378 56.9
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 6.5e-105 385.2 384 56.0
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.1e-104 384.4 365 57.3
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 9.4e-104 381.3 317 63.7
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 5.1e-102 375.6 378 56.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.6e-101 373.2 315 62.2
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 4.4e-101 372.5 331 60.1
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 3.1e-99 366.3 356 56.2
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 4.1e-99 365.9 414 51.9
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.8e-94 350.5 296 61.1
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.5e-93 347.4 436 48.9
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 3.7e-92 342.8 270 67.4
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 3.7e-92 342.8 270 67.4
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 8.2e-92 341.7 355 53.0
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 9.1e-91 338.2 354 52.5
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.3e-89 334.3 361 58.2
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 3.8e-89 332.8 355 51.0
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.5e-88 330.1 271 67.2
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 5.7e-85 318.9 321 53.9
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 5.9e-82 308.9 286 58.0
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.2e-81 307.0 262 62.6
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 2.9e-81 306.6 318 53.1
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 4.2e-80 302.8 234 71.4
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 6.1e-79 298.9 357 50.1
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.4e-75 287.7 312 51.6
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 5.4e-75 285.8 235 65.5
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.5e-74 282.7 180 78.3
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.7e-73 280.8 270 55.9
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 2.9e-65 253.4 143 90.9
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 6.1e-63 245.7 159 74.2
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 5.8e-61 239.2 270 47.8
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-58 230.3 138 83.3
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 3.5e-58 229.9 347 38.0
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 7.3e-56 222.2 356 40.2
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-55 221.5 138 81.2
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 2.4e-51 207.2 199 59.3
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 7.8e-50 202.2 129 81.4
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.3e-46 190.7 128 78.1
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.5e-45 188.0 150 61.3
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.4e-43 181.4 190 52.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 7.1e-43 179.1 174 57.5
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 8.9e-38 162.2 210 45.2
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 9.9e-29 132.1 253 34.8
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 4.9e-28 129.8 240 33.3
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.0e-26 122.9 88 71.6
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 5.6e-24 116.3 110 54.5
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.1e-23 114.4 92 65.2
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 3.8e-20 103.6 124 49.2
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.7e-18 97.4 111 43.2
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 3.0e-17 94.0 150 40.0
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 3.0e-17 94.0 269 31.6
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.8e-15 87.4 162 30.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 3.1e-14 84.0 44 88.6
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 9.3e-11 72.4 232 28.9
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.9e-10 69.3 52 67.3


User provided reference genes

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