Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 4.0e-64 248.1 134 100.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 2.2e-62 242.3 134 97.0
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.8e-61 239.2 136 91.9
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 4.1e-61 238.0 136 91.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 7.0e-61 237.3 136 89.7
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 7.0e-61 237.3 136 89.7
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.0e-60 235.7 136 89.7
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.0e-60 235.7 136 89.7
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.0e-60 235.7 136 89.7
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.0e-60 235.7 135 90.4
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 7.7e-60 233.8 134 95.5
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 5.0e-59 231.1 136 87.5
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 3.0e-56 221.9 136 84.6
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 3.0e-56 221.9 136 84.6
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 5.7e-55 217.6 136 83.1
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.1e-53 213.4 135 82.2
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 9.1e-53 210.3 135 78.5
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.9e-50 202.6 116 84.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 5.5e-50 201.1 116 84.5
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 7.2e-50 200.7 116 84.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 9.4e-50 200.3 116 82.8
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 9.4e-50 200.3 116 83.6
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 2.1e-49 199.1 116 82.8
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 2.1e-49 199.1 116 83.6
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.7e-49 198.7 116 81.9
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 3.6e-49 198.4 128 77.3
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.6e-49 198.4 116 81.0
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 6.1e-49 197.6 114 82.5
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 6.1e-49 197.6 116 82.8
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 6.1e-49 197.6 116 81.9
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 8.0e-49 197.2 116 81.0
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.0e-48 196.8 116 80.2
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.0e-48 196.8 116 80.2
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.8e-48 196.1 116 82.8
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.3e-48 195.7 116 81.9
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.3e-48 195.7 116 80.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.3e-48 195.7 116 82.8
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.0e-48 195.3 116 81.9
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.0e-48 195.3 116 80.2
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 3.0e-48 195.3 116 80.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 4.0e-48 194.9 116 79.3
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.2e-48 194.5 116 79.3
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 5.2e-48 194.5 116 80.2
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 5.2e-48 194.5 116 79.3
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.2e-47 193.4 116 79.3
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.2e-47 193.4 116 78.4
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.5e-47 193.0 116 80.2
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 2.0e-47 192.6 116 79.3
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.0e-47 192.6 116 80.2
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 3.4e-47 191.8 116 76.7
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 4.4e-47 191.4 116 79.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.4e-47 191.4 116 79.3
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 5.7e-47 191.0 116 78.4
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 7.5e-47 190.7 116 78.4
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 7.5e-47 190.7 116 77.6
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 9.8e-47 190.3 116 77.6
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 9.8e-47 190.3 116 81.9
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.3e-46 189.9 116 78.4
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.3e-46 189.9 116 76.7
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.8e-46 188.7 116 75.9
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.8e-46 188.7 116 77.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.7e-46 188.3 116 75.9
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.7e-46 188.3 116 78.4
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 4.9e-46 188.0 116 75.9
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.3e-46 187.6 116 77.6
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 8.3e-46 187.2 114 78.9
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 8.3e-46 187.2 116 76.7
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 8.3e-46 187.2 114 77.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-45 186.8 114 78.1
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.1e-45 186.8 116 76.7
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.4e-45 185.7 114 78.1
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.4e-45 185.7 116 77.6
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 3.1e-45 185.3 116 75.9
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.1e-45 185.3 116 74.1
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.1e-45 185.3 113 77.9
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 3.1e-45 185.3 110 78.2
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.1e-45 184.9 116 76.7
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 5.4e-45 184.5 134 76.1
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 9.1e-45 183.7 116 76.7
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 9.1e-45 183.7 116 75.9
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 9.1e-45 183.7 116 75.0
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.6e-44 183.0 114 75.4
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.6e-44 183.0 116 77.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.7e-44 182.2 116 73.3
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.9e-44 181.0 105 81.0
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.9e-44 181.0 114 74.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 5.9e-44 181.0 116 74.1
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 7.7e-44 180.6 116 75.9
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.7e-43 179.5 119 76.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.3e-43 179.1 116 74.1
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.3e-43 179.1 116 74.1
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.3e-43 179.1 116 72.4
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-43 178.7 114 74.6
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 5.0e-43 177.9 116 73.3
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 6.6e-43 177.6 116 74.1
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-42 176.4 116 74.1
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.9e-42 176.0 116 75.0
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 3.3e-42 175.3 116 70.7
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.2e-41 173.3 98 89.8
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.2e-41 173.3 98 89.8
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.2e-41 173.3 119 73.9
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.8e-41 172.2 108 75.9
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.8e-40 169.5 98 86.7
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.8e-40 169.5 116 73.3
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.3e-40 169.1 99 84.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.0e-40 168.7 118 69.5
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.2e-39 166.8 116 66.4
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.4e-39 165.2 110 74.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 5.7e-39 164.5 116 69.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.3e-38 163.3 114 70.2
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.7e-38 162.9 116 70.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.9e-38 161.4 98 78.6
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 8.3e-38 160.6 100 75.0
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.1e-37 160.2 116 69.8
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.8e-37 159.5 98 77.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 7.0e-37 157.5 114 69.3
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.2e-37 157.1 96 79.2
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.7e-36 155.6 90 78.9
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 3.5e-36 155.2 116 67.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 5.0e-35 151.4 95 77.9
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-34 149.8 104 69.2
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.9e-34 149.4 116 65.5
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 4.0e-32 141.7 116 64.7
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-31 140.2 86 76.7
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.4e-31 138.7 97 67.0
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 4.4e-31 138.3 93 71.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 9.8e-31 137.1 117 59.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.2e-30 136.0 117 59.0
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.4e-29 132.5 77 77.9
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 3.2e-29 132.1 106 62.3
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 4.1e-29 131.7 109 58.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.0e-29 131.0 102 65.7
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.7e-28 129.0 116 60.3
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.7e-27 126.3 76 75.0
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.7e-27 126.3 116 60.3
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.9e-27 125.2 84 73.8
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 6.6e-27 124.4 76 72.4
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.1e-26 123.6 116 50.9
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 7.3e-26 120.9 88 70.5
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 7.3e-26 120.9 110 53.6
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 9.5e-26 120.6 106 55.7
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.8e-25 119.0 115 53.9
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 4.7e-25 118.2 111 56.8
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 6.2e-25 117.9 112 50.9
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 6.2e-25 117.9 87 60.9
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 2.3e-24 115.9 111 52.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 3.1e-24 115.5 111 55.0
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.2e-24 114.8 112 50.0
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.7e-22 109.8 94 58.5
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 8.3e-22 107.5 121 49.6
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.1e-21 105.1 76 75.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 4.1e-21 105.1 61 85.2
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 9.2e-21 104.0 126 45.2
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 9.9e-15 84.0 52 69.2
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 4.3e-10 68.6 77 48.1
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 8.1e-09 64.3 35 85.7
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 2.6e-07 59.3 50 52.0
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 5.8e-07 58.2 111 34.2
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 7.6e-07 57.8 111 36.9
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 7.6e-07 57.8 111 35.1
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.7e-06 56.6 111 36.0
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 2.2e-06 56.2 111 36.0
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 2.2e-06 56.2 111 32.4
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 2.9e-06 55.8 111 36.0
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 2.9e-06 55.8 111 36.0
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 2.9e-06 55.8 111 35.1
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 2.9e-06 55.8 111 38.7
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 3.8e-06 55.5 111 34.2
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 4.9e-06 55.1 111 35.1
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 4.9e-06 55.1 111 35.1
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 4.9e-06 55.1 111 35.1
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 8.4e-06 54.3 113 38.1
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 8.4e-06 54.3 111 34.2


User provided reference genes

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