Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.9e-41 171.4 84 100.0
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 3.2e-35 151.4 84 91.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 3.5e-34 147.9 86 88.4
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 3.5e-34 147.9 86 88.4
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 6.6e-33 143.7 84 84.5
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.9e-32 142.1 87 80.5
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.9e-32 142.1 87 80.5
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.5e-32 141.7 87 79.3
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 3.1e-30 134.8 87 79.3
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 1.9e-24 115.5 126 54.8
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.2e-19 98.2 56 76.8
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.5e-16 88.6 95 52.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 2.4e-14 82.0 85 50.6
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.9e-14 80.1 88 45.5
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-13 79.7 88 45.5
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.2e-13 79.7 89 46.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.5e-13 79.3 88 45.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-13 78.6 88 44.3
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.6e-13 78.6 86 47.7
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.8e-13 77.4 94 45.7
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.6e-13 77.0 94 42.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.9e-13 76.6 82 50.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 9.9e-13 76.6 76 50.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 9.9e-13 76.6 82 45.1
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.9e-13 76.6 89 46.1
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 9.9e-13 76.6 87 44.8
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.3e-12 76.3 82 48.8
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-12 76.3 89 42.7
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.7e-12 75.9 92 48.9
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.7e-12 75.9 94 45.7
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.7e-12 75.9 85 49.4
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-12 75.5 89 44.9
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.9e-12 75.1 75 52.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.8e-12 74.7 94 44.7
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.8e-12 74.7 89 43.8
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 4.9e-12 74.3 88 45.5
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.9e-12 74.3 89 46.1
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 4.9e-12 74.3 85 47.1
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 6.4e-12 73.9 95 45.3
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 8.4e-12 73.6 63 60.3
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.1e-11 73.2 90 47.8
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.9e-11 72.4 87 46.0
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.9e-11 72.4 87 46.0
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.4e-11 72.0 91 47.3
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.4e-11 72.0 93 43.0
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.1e-11 71.2 84 50.0
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 4.1e-11 71.2 94 41.5
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.1e-11 70.5 55 63.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 9.2e-11 70.1 79 44.3
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 9.2e-11 70.1 75 52.0
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.2e-11 70.1 90 43.3
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 9.2e-11 70.1 93 43.0
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-10 69.7 81 46.9
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-10 69.7 81 46.9
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-10 69.7 77 44.2
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-10 69.7 77 44.2
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.6e-10 69.3 89 43.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.6e-10 69.3 88 44.3
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.1e-10 68.9 94 46.8
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.1e-10 68.9 92 43.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-10 68.9 90 43.3
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.1e-10 68.9 53 60.4
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 2.7e-10 68.6 90 41.1
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.7e-10 68.6 81 46.9
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.7e-10 68.6 81 46.9
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.7e-10 68.6 56 58.9
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.7e-10 68.6 96 45.8
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.7e-10 68.6 78 50.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.5e-10 68.2 94 39.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.5e-10 68.2 77 44.2
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.5e-10 68.2 86 45.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.5e-10 68.2 90 44.4
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.5e-10 68.2 75 49.3
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 4.6e-10 67.8 71 50.7
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.6e-10 67.8 90 42.2
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 6.0e-10 67.4 39 69.2
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 6.0e-10 67.4 39 71.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 6.0e-10 67.4 80 41.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 7.8e-10 67.0 93 41.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 7.8e-10 67.0 83 49.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.0e-09 66.6 90 44.4
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.0e-09 66.6 95 45.3
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.0e-09 66.6 92 45.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.0e-09 66.6 91 42.9
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.0e-09 66.6 52 55.8
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.3e-09 66.2 90 38.9
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-09 66.2 81 46.9
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-09 66.2 71 54.9
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.7e-09 65.9 91 44.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.7e-09 65.9 93 44.1
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.7e-09 65.9 81 49.4
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.7e-09 65.9 83 49.4
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-09 65.9 85 47.1
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 2.3e-09 65.5 93 47.3
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 3.9e-09 64.7 79 45.6
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 3.9e-09 64.7 92 41.3
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.9e-09 64.7 78 47.4
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.1e-09 64.3 42 71.4
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 5.1e-09 64.3 86 39.5
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 5.1e-09 64.3 92 39.1
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 5.1e-09 64.3 71 53.5
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 6.6e-09 63.9 77 45.5
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 6.6e-09 63.9 51 62.7
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 6.6e-09 63.9 46 67.4
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 6.6e-09 63.9 94 38.3
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 8.7e-09 63.5 100 42.0
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 8.7e-09 63.5 100 42.0
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.7e-09 63.5 83 44.6
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 8.7e-09 63.5 81 40.7
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.7e-09 63.5 63 50.8
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.5e-08 62.8 101 40.6
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.5e-08 62.8 72 47.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.5e-08 62.8 87 39.1
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.5e-08 62.8 95 38.9
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.5e-08 62.8 46 63.0
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.5e-08 62.8 70 44.3
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.9e-08 62.4 71 47.9
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.9e-08 62.4 94 39.4
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.5e-08 62.0 36 69.4
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.5e-08 62.0 77 45.5
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.5e-08 62.0 50 54.0
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 2.5e-08 62.0 88 39.8
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.5e-08 62.0 87 43.7
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.3e-08 61.6 47 63.8
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.3e-08 61.2 78 44.9
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.3e-08 61.2 93 38.7
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 5.6e-08 60.8 83 38.6
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.6e-08 60.8 75 42.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 7.3e-08 60.5 83 41.0
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 7.3e-08 60.5 81 45.7
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 9.6e-08 60.1 93 36.6
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 9.6e-08 60.1 89 38.2
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 9.6e-08 60.1 83 44.6
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 9.6e-08 60.1 83 44.6
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 9.6e-08 60.1 89 38.2
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 9.6e-08 60.1 81 42.0
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 9.6e-08 60.1 59 47.5
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.2e-07 59.7 70 45.7
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.2e-07 59.7 91 37.4
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.2e-07 59.7 94 42.6
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.2e-07 59.7 87 36.8
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.6e-07 59.3 54 53.7
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.6e-07 59.3 36 72.2
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.6e-07 59.3 88 37.5
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.6e-07 59.3 70 47.1
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.6e-07 59.3 41 65.9
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-07 58.9 36 66.7
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.1e-07 58.9 36 72.2
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.8e-07 58.5 43 60.5
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-07 58.5 39 66.7
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.8e-07 58.5 50 50.0
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.6e-07 58.2 91 39.6
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 3.6e-07 58.2 50 50.0
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 4.7e-07 57.8 54 59.3
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.2e-07 57.4 94 40.4
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 6.2e-07 57.4 94 40.4
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 6.2e-07 57.4 34 70.6
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 6.2e-07 57.4 31 74.2
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 8.1e-07 57.0 82 42.7
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 1.1e-06 56.6 97 38.1
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-06 56.6 50 58.0
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.1e-06 56.6 80 41.2
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 1.8e-06 55.8 42 64.3
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.8e-06 55.8 77 39.0
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.4e-06 55.5 78 41.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.4e-06 55.5 84 38.1
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 2.4e-06 55.5 51 52.9
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.0e-06 54.7 50 50.0
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.0e-06 54.7 96 42.7
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 4.0e-06 54.7 54 57.4
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.9e-06 53.9 78 38.5
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 6.9e-06 53.9 96 36.5
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 9.0e-06 53.5 40 55.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.0e-06 53.5 83 34.9


User provided reference genes

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