Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 6.2e-79 297.4 146 100.0
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 1.3e-65 253.1 147 87.8
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 2.4e-59 232.3 148 80.4
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 4.6e-58 228.0 148 79.1
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 7.6e-53 210.7 149 73.2
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 1.8e-41 172.9 170 61.8
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 3.9e-41 171.8 176 59.1
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 3.9e-41 171.8 176 59.1
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 1.5e-40 169.9 176 58.5
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 1.5e-40 169.9 176 58.5
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 1.5e-40 169.9 176 58.5
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 3.3e-24 115.5 74 74.3
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 2.0e-21 106.3 257 32.7
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 2.8e-15 85.9 104 40.4
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 2.8e-15 85.9 128 38.3
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 8.2e-15 84.3 148 35.1
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 1.4e-14 83.6 72 51.4
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 9.1e-14 80.9 72 51.4
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 1.6e-13 80.1 74 45.9
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 2.6e-13 79.3 183 29.0
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 1.0e-12 77.4 79 39.2
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 1.3e-12 77.0 79 48.1
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 1.3e-12 77.0 83 47.0
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 1.3e-12 77.0 163 32.5
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 1.7e-12 76.6 50 56.0
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 1.7e-12 76.6 82 45.1
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 2.2e-12 76.3 74 48.6
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 2.9e-12 75.9 85 38.8
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 3.8e-12 75.5 76 44.7
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 3.8e-12 75.5 48 56.2
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 5.0e-12 75.1 107 39.3
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 5.0e-12 75.1 72 40.3
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 6.5e-12 74.7 76 42.1
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 6.5e-12 74.7 110 37.3
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 8.5e-12 74.3 52 51.9
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 8.5e-12 74.3 76 44.7
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 1.1e-11 73.9 76 43.4
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 1.5e-11 73.6 49 55.1
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 1.5e-11 73.6 50 52.0
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 1.5e-11 73.6 90 35.6
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 1.9e-11 73.2 70 44.3
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 2.5e-11 72.8 53 49.1
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 3.2e-11 72.4 105 38.1
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 3.2e-11 72.4 178 32.0
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 3.2e-11 72.4 76 40.8
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 5.5e-11 71.6 60 50.0
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 5.5e-11 71.6 198 28.8
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 7.2e-11 71.2 55 45.5
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 7.2e-11 71.2 93 37.6
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 1.2e-10 70.5 85 38.8
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 1.2e-10 70.5 75 34.7
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 2.7e-10 69.3 72 45.8
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 2.7e-10 69.3 53 45.3
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 3.6e-10 68.9 49 55.1
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 4.7e-10 68.6 49 53.1
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 1.0e-09 67.4 55 52.7
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 1.4e-09 67.0 49 51.0
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.4e-09 67.0 71 42.3
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 1.8e-09 66.6 85 36.5
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 1.8e-09 66.6 83 37.3
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 2.3e-09 66.2 37 64.9
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 8.8e-09 64.3 44 52.3
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.2e-08 63.9 47 51.1
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 2.0e-08 63.2 115 33.0
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 3.3e-08 62.4 78 35.9
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 5.7e-08 61.6 79 40.5
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 5.7e-08 61.6 71 33.8
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 1.3e-07 60.5 84 38.1
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 2.8e-07 59.3 64 46.9
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 3.7e-07 58.9 76 40.8
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 1.8e-06 56.6 48 39.6
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 3.1e-06 55.8 45 48.9
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 5.3e-06 55.1 34 58.8


User provided reference genes

Program Settings