Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 0.0e+00 1099.3 566 100.0
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 0.0e+00 1079.3 566 97.5
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 7.2e-309 1063.1 566 95.9
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 9.4e-309 1062.8 566 95.6
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 4.7e-308 1060.4 566 95.8
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 7.0e-304 1046.6 567 94.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-301 1039.3 564 94.0
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.5e-295 1017.3 564 92.9
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 7.7e-295 1016.5 566 90.6
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 2.3e-291 1005.0 565 91.5
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 4.4e-290 1000.7 567 90.5
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.7e-289 998.8 567 90.5
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.7e-289 998.8 567 90.5
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-288 996.1 567 90.1
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 7.0e-288 993.4 565 90.1
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 7.8e-287 989.9 546 92.3
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.2e-279 966.1 568 85.4
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 7.6e-250 867.1 549 78.7
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 3.8e-249 864.8 552 79.0
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 6.4e-249 864.0 556 78.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.1e-248 863.2 563 77.8
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 2.4e-248 862.1 552 76.8
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 9.3e-248 860.1 551 77.7
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 4.6e-247 857.8 558 77.6
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.6e-247 857.8 552 78.3
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 7.9e-247 857.1 552 76.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 5.1e-246 854.4 558 77.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.1e-245 853.2 558 76.9
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.1e-245 853.2 549 77.2
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.9e-245 852.4 558 76.9
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.9e-245 852.4 549 77.0
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.9e-245 852.4 560 76.2
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.6e-245 850.9 549 76.7
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 7.3e-245 850.5 550 77.8
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 3.6e-244 848.2 566 74.4
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 3.6e-244 848.2 552 77.5
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.4e-243 846.3 569 74.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.0e-243 844.7 552 77.0
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.9e-243 844.0 552 76.6
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 9.0e-243 843.6 552 75.5
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.3e-241 839.7 561 74.3
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 8.4e-241 837.0 619 69.6
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.9e-240 835.9 560 75.2
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.2e-240 834.7 559 74.6
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 9.3e-240 833.6 552 75.0
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.2e-239 833.2 559 75.0
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.7e-239 832.0 567 73.5
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.5e-239 831.6 567 74.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 4.6e-239 831.2 552 74.6
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-238 829.7 575 73.4
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.0e-238 828.6 552 74.3
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.0e-238 828.6 550 74.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.9e-238 828.2 560 73.8
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 5.1e-238 827.8 550 74.4
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.1e-238 827.8 552 74.3
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.5e-237 825.5 552 74.1
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 9.6e-237 823.5 562 73.5
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 2.1e-236 822.4 553 74.7
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 6.2e-236 820.8 579 71.8
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 8.1e-236 820.5 560 73.6
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.1e-235 820.1 562 73.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.4e-235 819.7 560 72.9
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.2e-234 816.6 566 72.3
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.5e-234 816.2 558 73.3
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.5e-234 816.2 550 73.6
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.0e-234 815.8 555 72.6
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 2.0e-234 815.8 558 72.9
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.6e-234 815.5 554 73.8
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.6e-234 815.5 561 72.5
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.4e-234 815.1 559 73.9
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 7.6e-234 813.9 556 72.5
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.0e-233 813.5 554 73.6
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.7e-233 812.8 552 73.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 3.8e-233 811.6 559 72.5
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.2e-232 808.5 559 72.5
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 7.1e-232 807.4 541 75.8
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 7.1e-232 807.4 534 74.2
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 9.3e-232 807.0 551 73.5
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 9.3e-232 807.0 557 72.5
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.2e-231 806.6 555 72.6
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 3.5e-231 805.1 551 73.1
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.6e-231 804.7 560 73.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.3e-230 803.1 551 73.0
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.8e-230 802.7 565 71.9
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.3e-230 802.4 560 72.9
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 6.7e-230 800.8 548 74.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 8.7e-230 800.4 578 68.9
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.1e-229 800.0 558 72.4
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-229 799.3 548 74.1
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 2.5e-229 798.9 556 71.9
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 5.7e-229 797.7 562 71.9
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 5.7e-229 797.7 556 71.4
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 4.8e-228 794.7 545 72.8
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 6.2e-228 794.3 564 70.9
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.4e-227 792.3 570 70.4
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.1e-227 792.0 601 68.4
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 9.0e-227 790.4 563 72.8
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.2e-226 790.0 551 71.1
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 4.2e-224 781.6 542 72.7
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.8e-222 776.2 613 66.9
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.9e-221 772.7 585 68.4
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.7e-220 768.5 553 69.1
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.4e-219 765.8 536 70.5
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.4e-219 765.8 551 71.0
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.1e-219 765.4 602 65.6
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.1e-219 765.0 529 72.6
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-216 756.9 405 93.6
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 5.5e-216 754.6 565 68.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.2e-215 753.4 405 93.3
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.1e-215 752.7 517 72.3
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 6.1e-215 751.1 553 69.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.4e-214 750.0 636 62.7
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 3.9e-214 748.4 548 66.6
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 5.3e-211 738.0 405 92.3
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.5e-210 736.5 549 69.6
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 5.9e-210 734.6 549 67.2
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 7.2e-208 727.6 561 65.2
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 9.7e-205 717.2 547 64.0
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 4.5e-202 708.4 577 62.7
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 7.7e-202 707.6 470 74.3
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 3.0e-198 695.7 443 77.9
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.4e-195 686.8 554 64.3
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 6.1e-191 671.4 475 69.7
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 2.3e-190 669.5 561 59.5
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.8e-188 662.5 473 71.0
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 7.0e-187 657.9 498 63.5
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.9e-184 649.8 542 59.6
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 8.3e-180 634.4 560 58.9
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 3.1e-166 589.3 409 71.4
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 6.4e-156 555.1 359 78.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.4e-149 532.3 357 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.9e-140 503.1 529 48.6
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 6.4e-140 501.9 546 48.0
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.8e-126 457.2 327 68.5
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 7.6e-117 425.2 269 78.4
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 8.7e-113 411.8 334 63.2
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.2e-95 354.0 220 76.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 9.7e-80 302.0 195 72.8
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.2e-74 285.0 197 76.1
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 2.7e-61 240.7 231 57.1
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.0e-52 210.7 138 75.4
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-49 199.1 152 65.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-44 185.3 147 64.6
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-42 178.3 117 71.8
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-41 172.6 186 52.7
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.7e-29 134.4 82 86.6
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.1e-22 112.5 94 60.6
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.1e-21 108.2 127 47.2
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 4.6e-21 107.1 83 65.1
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.3e-20 105.5 93 58.1
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.3e-20 104.8 71 63.4
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.3e-18 99.0 82 59.8
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 4.5e-08 63.9 64 51.6
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 8.4e-07 59.7 222 25.7


User provided reference genes

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