Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G22160 Arabidopsis lyrata HOM05D000510 ORTHO05D014865 8.4e-65 250.4 142 100.0
AL5G17480 Arabidopsis lyrata HOM05D000510 ORTHO05D014865 2.5e-64 248.8 142 99.3
AL3G21010 Arabidopsis lyrata HOM05D000510 ORTHO05D007145 3.4e-58 228.4 132 99.2
AT3G09780 Arabidopsis thaliana HOM05D000510 ORTHO05D007145 3.0e-54 215.3 132 94.7
Sp3g08120 Schrenkiella parvula HOM05D000510 ORTHO05D007145 2.2e-52 209.1 132 89.4
CARHR084230 Cardamine hirsuta HOM05D000510 ORTHO05D007145 8.2e-52 207.2 132 81.8
Thhalv10020117m.g Eutrema salsugineum HOM05D000510 ORTHO05D007145 1.8e-51 206.1 135 88.1
Carub.0003s0887 Capsella rubella HOM05D000510 ORTHO05D007145 6.9e-51 204.1 134 88.8
BcaC05g29701 Brassica carinata HOM05D000510 ORTHO05D007145 1.2e-47 193.4 134 80.6
A05p39330 Brassica napus HOM05D000510 ORTHO05D007145 2.6e-45 185.7 134 82.8
BraA05t22715Z Brassica rapa HOM05D000510 ORTHO05D007145 2.6e-45 185.7 134 83.6
BcaC05g29485 Brassica carinata HOM05D000510 ORTHO05D007145 3.4e-42 175.3 135 78.5
C05p58330 Brassica napus HOM05D000510 ORTHO05D007145 3.4e-42 175.3 135 78.5
Aa31LG3G2240 Aethionema arabicum HOM05D000510 ORTHO05D007145 7.7e-42 174.1 132 69.7
BolC5t34486H Brassica oleracea HOM05D000510 ORTHO05D007145 7.7e-42 174.1 135 78.5
THA.LOC104826972 Tarenaya hassleriana HOM05D000510 ORTHO05D007145 2.9e-41 172.2 136 70.6
RcHm_v2.0_Chr3g0469481 Rosa chinensis HOM05D000510 ORTHO05D007145 3.3e-29 132.1 125 59.2
QL07p044599 Quercus lobata HOM05D000510 ORTHO05D007145 4.4e-29 131.7 125 60.8
Sopen09g002600 Solanum pennellii HOM05D000510 ORTHO05D007145 4.4e-29 131.7 125 58.4
Cfa017543 Carpinus fangiana HOM05D000510 ORTHO05D007145 5.7e-29 131.3 120 66.7
CiPaw.09G176700 Carya illinoinensis HOM05D000510 ORTHO05D007145 7.5e-29 131.0 123 60.2
Ciclev10011116m.g Citrus clementina HOM05D000510 ORTHO05D007145 1.7e-28 129.8 113 63.7
PGSC0003DMG400020907 Solanum tuberosum HOM05D000510 ORTHO05D007145 2.8e-28 129.0 125 56.8
Cpa.g.sc102.4 Carica papaya HOM05D000510 ORTHO05D007145 3.7e-28 128.6 115 68.7
FAN05G4653 Fragaria x ananassa HOM05D000510 ORTHO05D007145 4.8e-28 128.3 129 62.8
FAN09G2891 Fragaria x ananassa HOM05D000510 ORTHO05D007145 1.4e-27 126.7 129 59.7
Gohir.A09G150000 Gossypium hirsutum HOM05D000510 ORTHO05D007145 1.4e-27 126.7 143 60.8
Hma1.2p1_0205F.1_g087510 Hydrangea macrophylla HOM05D000510 ORTHO05D007145 1.8e-27 126.3 127 58.3
Solyc09g007750.4 Solanum lycopersicum HOM05D000510 ORTHO05D007145 3.1e-27 125.6 131 54.2
MELO3C014245.2 Cucumis melo HOM05D000510 ORTHO05D007145 4.1e-27 125.2 125 60.0
Atru.chr8.1872 Acer truncatum HOM05D000510 ORTHO05D007145 5.3e-27 124.8 126 55.6
CAN.G888.9 Capsicum annuum HOM05D000510 ORTHO05D007145 7.0e-27 124.4 110 60.9
Glyma.13G139800 Glycine max HOM05D000510 ORTHO05D007145 7.0e-27 124.4 125 54.4
Nitab4.5_0005150g0010 Nicotiana tabacum HOM05D000510 ORTHO05D007145 7.0e-27 124.4 133 55.6
Manes.08G006700 Manihot esculenta HOM05D000510 ORTHO05D007145 9.1e-27 124.0 132 62.9
Gohir.D09G145900 Gossypium hirsutum HOM05D000510 ORTHO05D007145 1.2e-26 123.6 129 62.8
Prupe.6G237300 Prunus persica HOM05D000510 ORTHO05D007145 1.2e-26 123.6 113 60.2
Sed0006147 Sechium edule HOM05D000510 ORTHO05D007145 2.7e-26 122.5 125 57.6
Duzib106G0978 Durio zibethinus HOM05D000510 ORTHO05D007145 3.5e-26 122.1 133 60.9
CsaV3_6G039490 Cucumis sativus L. HOM05D000510 ORTHO05D007145 4.5e-26 121.7 125 58.4
Rhsim04G0147600 Rhododendron simsii HOM05D000510 ORTHO05D007145 5.9e-26 121.3 128 55.5
Glyma.10G052600 Glycine max HOM05D000510 ORTHO05D007145 7.7e-26 120.9 128 53.9
PGR004G1874 Punica granatum HOM05D000510 ORTHO05D007145 1.0e-25 120.6 126 68.3
Thecc.05G058500 Theobroma cacao HOM05D000510 ORTHO05D007145 1.0e-25 120.6 125 65.6
VMungo0720G1200 Vigna mungo HOM05D000510 ORTHO05D007145 1.0e-25 120.6 123 55.3
COL.COLO4_27033 Corchorus olitorius HOM05D000510 ORTHO05D007145 1.3e-25 120.2 141 61.7
MD12G1119400 Malus domestica HOM05D000510 ORTHO05D007145 1.3e-25 120.2 122 63.9
Sc02g0001850 Simmondsia chinensis HOM05D000510 ORTHO05D007145 1.7e-25 119.8 128 52.3
CANSAT80G1010 Cannabis sativa HOM05D000510 ORTHO05D007145 2.9e-25 119.0 139 61.2
CSS0016683 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D007145 6.5e-25 117.9 123 56.1
FAN01G3130 Fragaria x ananassa HOM05D000510 ORTHO05D014865 8.5e-25 117.5 104 68.3
CSS0031128 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D007145 1.1e-24 117.1 127 59.8
ClCG04G008970 Citrullus lanatus HOM05D000510 ORTHO05D007145 1.5e-24 116.7 104 62.5
Duzib128G1672 Durio zibethinus HOM05D000510 ORTHO05D007145 1.5e-24 116.7 125 62.4
FAN27G2377 Fragaria x ananassa HOM05D000510 ORTHO05D007145 1.9e-24 116.3 104 67.3
FAN02G2292 Fragaria x ananassa HOM05D000510 ORTHO05D007145 3.2e-24 115.5 104 67.3
FAN04G0783 Fragaria x ananassa HOM05D000510 ORTHO05D007145 3.2e-24 115.5 104 67.3
Lj5g0004161 Lotus japonicus HOM05D000510 ORTHO05D007145 4.2e-24 115.2 128 51.6
TAR623G1605 Trochodendron aralioides HOM05D000510 ORTHO05D007145 4.2e-24 115.2 125 51.2
Phvul.007G220700 Phaseolus vulgaris HOM05D000510 ORTHO05D007145 5.5e-24 114.8 126 52.4
TWI53G2119 Tripterygium wilfordii HOM05D000510 ORTHO05D007145 5.5e-24 114.8 123 60.2
Lj1P915T26 Lonicera japonica HOM05D000510 ORTHO05D007145 7.2e-24 114.4 116 55.2
Psat6g066880 Pisum sativum HOM05D000510 ORTHO05D007145 9.4e-24 114.0 127 51.2
SGA_v2.0_scaffold126G33926 Striga asiatica HOM05D000510 ORTHO05D007145 9.4e-24 114.0 122 54.1
TPR.G21201 Trifolium pratense HOM05D000510 ORTHO05D007145 9.4e-24 114.0 121 51.2
Actinidia13088 Actinidia chinensis HOM05D000510 ORTHO05D007145 1.2e-23 113.6 104 59.6
FvH4_6g15770 Fragaria vesca HOM05D000510 ORTHO05D007145 1.2e-23 113.6 104 66.3
Medtr1g064560 Medicago truncatula HOM05D000510 ORTHO05D007145 2.1e-23 112.8 127 50.4
Migut.J00552 Erythranthe guttata HOM05D000510 ORTHO05D007145 2.7e-23 112.5 126 54.8
Nitab4.5_0000101g0080 Nicotiana tabacum HOM05D000510 ORTHO05D007145 2.7e-23 112.5 104 57.7
Lalb_Chr21g0314771 Lupinus albus HOM05D000510 ORTHO05D007145 4.7e-23 111.7 132 58.3
MD04G1098700 Malus domestica HOM05D000510 ORTHO05D007145 4.7e-23 111.7 123 57.7
Aqoxy2G03218 Aquilegia oxysepala HOM05D000510 ORTHO05D007145 1.0e-22 110.5 126 47.6
TWI63G0962 Tripterygium wilfordii HOM05D000510 ORTHO05D007145 1.0e-22 110.5 127 48.8
Eucgr.A01154 Eucalyptus grandis HOM05D000510 ORTHO05D007145 1.4e-22 110.2 104 58.7
Peaxi162Scf00413g00316 Petunia axillaris HOM05D000510 ORTHO05D007145 1.4e-22 110.2 96 61.5
DCAR_020837 Daucus carota HOM05D000510 ORTHO05D007145 2.3e-22 109.4 124 58.1
Ca_11468_v3 Cicer arietinum L. HOM05D000510 ORTHO05D007145 3.0e-22 109.0 105 56.2
FAN26G2271 Fragaria x ananassa HOM05D000510 ORTHO05D014865 3.0e-22 109.0 103 64.1
FAN14G5466 Fragaria x ananassa HOM05D000510 ORTHO05D007145 4.0e-22 108.6 104 64.4
CANSAT56G1401 Cannabis sativa HOM05D000510 ORTHO05D007145 5.2e-22 108.2 109 52.3
FAN23G0304 Fragaria x ananassa HOM05D000510 ORTHO05D014865 5.2e-22 108.2 104 64.4
Lsat_1_v5_gn_6_30481 Lactuca sativa HOM05D000510 ORTHO05D007145 6.8e-22 107.8 106 55.7
Potri.010G221200 Populus trichocarpa HOM05D000510 ORTHO05D007145 1.5e-21 106.7 125 49.6
Gorai.006G167000 Gossypium raimondii HOM05D000510 ORTHO05D007145 2.6e-21 105.9 127 55.1
Ah.15g092340 Amaranthus hybridus HOM05D000510 ORTHO05D007145 4.4e-21 105.1 126 50.0
Sabra10G0170900 Salix brachista HOM05D000510 ORTHO05D007145 4.4e-21 105.1 125 48.8
Lj3P981T35 Lonicera japonica HOM05D000510 ORTHO05D007145 5.7e-21 104.8 104 54.8
Cc06_g03880 Coffea canephora HOM05D000510 ORTHO05D007145 1.7e-20 103.2 127 50.4
AUR62040365 Chenopodium quinoa HOM05D000510 ORTHO05D007145 2.2e-20 102.8 130 53.1
HanXRQChr13g0399731 Helianthus annuus HOM05D000510 ORTHO05D007145 2.2e-20 102.8 131 47.3
QL08p056291 Quercus lobata HOM05D000510 ORTHO05D007145 2.8e-20 102.4 127 48.0
AUR62042286 Chenopodium quinoa HOM05D000510 ORTHO05D007145 3.7e-20 102.1 130 53.1
MSTRG.19154 Avicennia marina HOM05D000510 ORTHO05D007145 4.8e-20 101.7 128 46.9
Gohir.D05G297100 Gossypium hirsutum HOM05D000510 ORTHO05D007145 1.1e-19 100.5 128 46.9
Gohir.A05G297200 Gossypium hirsutum HOM05D000510 ORTHO05D007145 1.8e-19 99.8 128 46.1
MBI07_g19320_MAGBIO Magnolia biondii HOM05D000510 ORTHO05D007145 4.1e-19 98.6 125 47.2
Gorai.009G314400 Gossypium raimondii HOM05D000510 ORTHO05D007145 5.4e-19 98.2 128 46.1
PSO339G1878 Papaver somniferum HOM05D000510 ORTHO05D007145 7.0e-19 97.8 132 45.5
PSO384G3222 Papaver somniferum HOM05D000510 ORTHO05D007145 7.0e-19 97.8 129 44.2
Aa31LG5G20170 Aethionema arabicum HOM05D000510 ORTHO05D007145 1.2e-18 97.1 125 48.0
Dinv35752 Davidia involucrata HOM05D000510 ORTHO05D007145 1.2e-18 97.1 102 54.9
A03p21890 Brassica napus HOM05D000510 ORTHO05D007145 1.6e-18 96.7 137 43.1
BraA03t11425Z Brassica rapa HOM05D000510 ORTHO05D007145 1.6e-18 96.7 137 43.1
ECA233G1270 Erigeron canadensis HOM05D000510 ORTHO05D007145 1.6e-18 96.7 104 51.0
Thhalv10016278m.g Eutrema salsugineum HOM05D000510 ORTHO05D007145 1.6e-18 96.7 136 45.6
FAN06G2154 Fragaria x ananassa HOM05D000510 ORTHO05D014865 1.6e-18 96.7 85 69.4
Sp4g21510 Schrenkiella parvula HOM05D000510 ORTHO05D007145 1.6e-18 96.7 120 46.7
SalBow3G0333 Salvia bowleyana HOM05D000510 ORTHO05D007145 2.0e-18 96.3 104 49.0
SalBow3G2932 Salvia bowleyana HOM05D000510 ORTHO05D007145 2.0e-18 96.3 104 49.0
EL10Ac7g16550 Beta vulgaris HOM05D000510 ORTHO05D007145 2.7e-18 95.9 128 49.2
Carub.0004s2122 Capsella rubella HOM05D000510 ORTHO05D007145 2.7e-18 95.9 139 43.9
CSS0047243 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D007145 3.5e-18 95.5 117 49.6
FAN06G4425 Fragaria x ananassa HOM05D000510 ORTHO05D014865 4.5e-18 95.1 87 67.8
THA.LOC104825218 Tarenaya hassleriana HOM05D000510 ORTHO05D007145 1.0e-17 94.0 127 44.1
Thecc.10G072000 Theobroma cacao HOM05D000510 ORTHO05D007145 1.0e-17 94.0 133 45.1
Gorai.001G139900 Gossypium raimondii HOM05D000510 ORTHO05D014865 1.3e-17 93.6 131 42.0
C03p25960 Brassica napus HOM05D000510 ORTHO05D007145 1.7e-17 93.2 137 43.1
BolC3t14981H Brassica oleracea HOM05D000510 ORTHO05D007145 1.7e-17 93.2 137 43.1
arahy.Tifrunner.gnm1.ann1.EUJ23N Arachis hypogaea HOM05D000510 ORTHO05D007145 3.8e-17 92.0 105 52.4
arahy.Tifrunner.gnm1.ann1.V9XADN Arachis hypogaea HOM05D000510 ORTHO05D007145 3.8e-17 92.0 105 52.4
BcaB01g03650 Brassica carinata HOM05D000510 ORTHO05D007145 6.5e-17 91.3 127 44.9
Gohir.D07G129350 Gossypium hirsutum HOM05D000510 ORTHO05D014865 1.1e-16 90.5 128 43.0
AL4G36480 Arabidopsis lyrata HOM05D000510 ORTHO05D007145 1.5e-16 90.1 137 42.3
DCAR_019108 Daucus carota HOM05D003587 ORTHO05D007145 1.9e-16 89.7 125 42.4
CARHR133930 Cardamine hirsuta HOM05D000510 ORTHO05D007145 5.5e-16 88.2 137 42.3
Potri.016G089200 Populus trichocarpa HOM05D000510 ORTHO05D007145 1.2e-15 87.0 124 47.6
AT2G39180 Arabidopsis thaliana HOM05D000510 ORTHO05D007145 3.6e-15 85.5 137 40.9
Nn2g10765 Nelumbo nucifera HOM05D000510 ORTHO05D007145 3.6e-15 85.5 112 43.8
Sabra16G0094900 Salix brachista HOM05D000510 ORTHO05D007145 6.1e-15 84.7 121 47.9
Gorai.009G314300 Gossypium raimondii HOM05D000510 ORTHO05D007145 1.4e-14 83.6 130 42.3
Gohir.D05G297075 Gossypium hirsutum HOM05D000510 ORTHO05D014865 4.0e-14 82.0 112 44.6
ECA233G2226 Erigeron canadensis HOM05D000510 ORTHO05D014865 8.3e-12 74.3 103 44.7
Haze_20601 Corylus avellana HOM05D000510 ORTHO05D007145 9.2e-11 70.9 46 76.1
Haze_20603 Corylus avellana HOM05D000510 ORTHO05D007145 9.2e-11 70.9 46 76.1
Actinidia26434 Actinidia chinensis HOM05D000510 ORTHO05D007145 4.3e-08 62.0 75 49.3
Mapoly0082s0079 Marchantia polymorpha HOM05D000510 ORTHO05D007145 2.1e-07 59.7 126 33.3
Oeu005337.1 Olea europaea HOM05D000510 ORTHO05D007145 8.0e-07 57.8 46 65.2
SMO244G0095 Selaginella moellendorffii HOM05D000510 ORTHO05D007145 8.9e-06 54.3 102 33.3


User provided reference genes

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