Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 3.4e-285 984.6 593 100.0
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 1.1e-235 820.1 595 83.2
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.7e-220 769.6 605 72.4
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 7.8e-213 744.2 616 71.9
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 3.3e-211 738.8 588 72.4
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 2.8e-210 735.7 588 72.1
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 8.9e-209 730.7 461 85.5
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 4.1e-206 721.8 591 70.7
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 5.4e-198 694.9 590 71.0
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 7.1e-198 694.5 590 70.8
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 7.1e-198 694.5 590 70.8
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.4e-193 680.2 602 67.6
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.1e-173 613.2 609 66.0
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 4.7e-133 479.2 625 54.9
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.4e-132 477.6 625 54.6
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 4.8e-130 469.2 625 54.4
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 4.1e-129 466.1 615 52.2
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.2e-128 464.5 604 52.0
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 1.7e-127 460.7 612 51.3
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 5.0e-127 459.1 615 49.9
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.9e-126 457.2 494 55.5
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 3.2e-126 456.4 614 50.2
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 2.7e-125 453.4 619 49.3
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 4.7e-125 452.6 618 50.2
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.4e-124 451.1 616 50.8
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 1.8e-124 450.7 511 54.0
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 8.8e-124 448.4 608 50.7
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 1.2e-123 448.0 618 49.7
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.3e-122 444.5 588 52.0
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 4.1e-121 439.5 613 48.6
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 4.5e-120 436.0 596 50.5
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.0e-119 434.9 611 49.3
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 2.9e-119 433.3 611 47.6
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 6.5e-119 432.2 611 49.3
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.5e-118 431.0 466 56.2
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 6.1e-117 425.6 621 48.0
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 6.1e-117 425.6 486 54.1
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.3e-116 423.7 619 47.0
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 4.0e-116 422.9 645 47.1
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 6.8e-116 422.2 622 48.1
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.2e-115 421.4 495 53.7
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 3.4e-115 419.9 388 63.1
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.4e-115 419.9 623 47.4
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.7e-115 419.1 633 45.8
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.8e-115 418.3 482 53.5
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 1.4e-113 414.5 528 49.8
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 2.4e-113 413.7 662 46.2
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 7.0e-113 412.1 615 46.3
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 4.5e-112 409.5 594 50.2
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.0e-111 408.3 633 47.6
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 2.3e-111 407.1 632 48.9
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 2.5e-110 403.7 479 53.4
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 4.2e-110 402.9 602 49.3
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 5.5e-110 402.5 489 53.6
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 7.2e-110 402.1 478 52.9
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 4.7e-109 399.4 459 54.2
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.0e-108 398.3 632 47.0
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.4e-108 397.9 611 48.8
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.3e-108 397.1 601 51.2
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 5.2e-108 396.0 488 52.3
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 6.8e-108 395.6 662 44.7
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 8.9e-108 395.2 484 53.1
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.6e-107 393.7 534 47.2
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 7.5e-107 392.1 482 52.1
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 9.8e-107 391.7 610 44.4
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 6.3e-106 389.0 462 51.9
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 8.3e-106 388.7 494 51.2
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 8.3e-106 388.7 507 50.1
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.1e-105 388.3 505 49.1
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.4e-105 387.9 620 46.9
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.7e-104 383.6 544 48.5
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.0e-103 381.7 544 48.3
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.3e-103 381.3 468 52.1
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 5.0e-103 379.4 579 46.8
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 5.0e-103 379.4 477 51.2
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.9e-102 377.5 509 48.9
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 3.3e-102 376.7 653 44.7
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 3.1e-100 370.2 444 52.7
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.5e-99 367.9 485 49.3
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.7e-98 364.4 516 46.5
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.9e-98 363.6 513 47.0
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 1.2e-96 358.2 639 43.5
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 3.0e-95 353.6 607 44.6
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 5.0e-95 352.8 359 58.2
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 9.5e-94 348.6 662 40.5
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.2e-93 348.2 660 42.9
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.6e-93 347.8 530 47.2
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.1e-92 345.1 593 42.3
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.4e-92 344.7 486 47.5
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 6.8e-92 342.4 508 46.7
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 2.4e-89 334.0 504 45.6
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 9.2e-89 332.0 398 51.5
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 3.0e-87 327.0 498 46.2
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 8.6e-87 325.5 609 40.1
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 2.5e-78 297.4 224 69.2
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.1e-73 279.3 630 34.9
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 5.1e-71 273.1 617 37.3
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 4.7e-69 266.5 388 48.5
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 4.7e-69 266.5 388 48.5
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.4e-68 264.2 284 53.2
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 6.4e-66 256.1 299 53.8
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 6.0e-64 249.6 297 50.8
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 5.4e-57 226.5 491 36.9
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.0e-55 222.2 247 55.1
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 3.4e-51 207.2 371 43.7
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 1.6e-48 198.4 233 52.8
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.3e-47 194.5 143 72.0
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.1e-46 192.2 352 38.4
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 2.5e-41 174.5 195 57.9
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 5.5e-41 173.3 188 59.6
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.3e-38 164.1 241 44.8
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 5.7e-38 163.3 223 45.7
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 3.7e-37 160.6 221 48.9
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 5.0e-34 150.2 177 52.0
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.4e-33 148.7 142 55.6
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 4.2e-33 147.1 247 44.1
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 8.8e-31 139.4 129 57.4
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 2.0e-30 138.3 138 58.0
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 4.7e-24 117.1 166 44.0
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 1.4e-23 115.5 66 87.9
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 5.1e-23 113.6 244 37.3
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 5.9e-19 100.1 272 28.7
CARHR284270 Cardamine hirsuta HOM05D006007 ORTHO05D007518 2.6e-11 74.7 53 67.9
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 7.7e-11 73.2 171 37.4
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.3e-10 72.4 147 37.4
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 1.8e-07 62.0 61 54.1
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.2e-06 59.3 151 35.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 1.5e-06 58.9 39 74.4


User provided reference genes

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