Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G19420 Arabidopsis lyrata HOM05D011853 ORTHO05D014034 3.2e-270 934.5 472 100.0
Carub.0005s0805 Capsella rubella HOM05D011853 ORTHO05D014034 3.7e-133 479.2 524 56.1
AT3G29340 Arabidopsis thaliana HOM05D011853 ORTHO05D014034 1.3e-117 427.6 387 63.8
AT4G04404 Arabidopsis thaliana HOM05D011853 ORTHO05D014034 1.8e-71 274.2 245 63.3
AL5G19400 Arabidopsis lyrata HOM05D011853 ORTHO05D014034 3.7e-64 250.0 474 42.2
Sp2g17930 Schrenkiella parvula HOM05D011853 ORTHO05D014034 8.4e-61 238.8 420 45.5
BcaC06g30871 Brassica carinata HOM05D011853 ORTHO05D014034 2.7e-51 207.2 490 38.6
Thhalv10005658m.g Eutrema salsugineum HOM05D011853 ORTHO05D014034 7.4e-41 172.6 281 47.3
Carub.0005s0804 Capsella rubella HOM05D011853 ORTHO05D014034 3.6e-35 153.7 336 38.7
BolC7t44344H Brassica oleracea HOM05D011853 ORTHO05D014034 5.7e-33 146.4 316 39.2
C07p38220 Brassica napus HOM05D011853 ORTHO05D014034 7.4e-33 146.0 337 38.3
A06p39940 Brassica napus HOM05D011853 ORTHO05D014034 1.0e-29 135.6 321 36.1
BraA06t26909Z Brassica rapa HOM05D011853 ORTHO05D014034 1.0e-29 135.6 321 36.1
BcaC06g33688 Brassica carinata HOM05D011853 ORTHO05D014034 2.2e-29 134.4 338 36.7
THA.LOC104805505 Tarenaya hassleriana HOM05D011853 ORTHO05D014034 9.5e-12 75.9 279 27.6
Oeu020430.1 Olea europaea HOM05D000174 ORTHO05D001526 3.4e-09 67.4 233 24.0
Lj9P406T21 Lonicera japonica HOM05D000174 ORTHO05D001526 9.8e-09 65.9 227 28.6
Sed0012205 Sechium edule HOM05D001658 ORTHO05D001406 1.3e-08 65.5 143 34.3
unitig_0.g1313 Utricularia gibba HOM05D000174 ORTHO05D001526 1.7e-08 65.1 143 28.0
Eucgr.K02500 Eucalyptus grandis HOM05D001658 ORTHO05D001406 2.2e-08 64.7 318 24.5
Manes.02G053200 Manihot esculenta HOM05D001658 ORTHO05D001406 2.2e-08 64.7 135 31.9
Lalb_Chr24g0394961 Lupinus albus HOM05D000174 ORTHO05D001106 2.8e-08 64.3 142 32.4
Sed0016363 Sechium edule HOM05D001658 ORTHO05D001406 4.9e-08 63.5 147 34.0
Eucgr.G02745 Eucalyptus grandis HOM05D000174 ORTHO05D001106 6.3e-08 63.2 165 33.3
Lalb_Chr13g0291851 Lupinus albus HOM05D000174 ORTHO05D001526 8.3e-08 62.8 176 29.5
Nn3g17399 Nelumbo nucifera HOM05D001658 ORTHO05D001406 8.3e-08 62.8 135 30.4
SEGI_41393 Sequoiadendron giganteum HOM05D000174 ORTHO05D001526 8.3e-08 62.8 127 31.5
Prupe.3G257500 Prunus persica HOM05D001658 ORTHO05D001406 1.1e-07 62.4 163 27.6
MD02G1211300 Malus domestica HOM05D000174 ORTHO05D001526 1.8e-07 61.6 297 25.3
CAN.G899.2 Capsicum annuum HOM05D000174 ORTHO05D001526 2.4e-07 61.2 119 31.9
CsaV3_1G005870 Cucumis sativus L. HOM05D001658 ORTHO05D001406 3.2e-07 60.8 147 36.7
SalBow5G0331 Salvia bowleyana HOM05D000174 ORTHO05D001406 3.2e-07 60.8 195 27.7
Ah.05g173720 Amaranthus hybridus HOM05D000174 ORTHO05D001526 5.4e-07 60.1 129 30.2
CAN.G1432.9 Capsicum annuum HOM05D000174 ORTHO05D001106 5.4e-07 60.1 126 33.3
FAN06G2030 Fragaria x ananassa HOM05D000174 ORTHO05D001526 5.4e-07 60.1 188 29.3
HanXRQChr02g0055351 Helianthus annuus HOM05D000174 ORTHO05D001106 5.4e-07 60.1 145 28.3
COL.COLO4_22218 Corchorus olitorius HOM05D001658 ORTHO05D001406 7.0e-07 59.7 203 29.1
Glyma.17G076900 Glycine max HOM05D001658 ORTHO05D001406 7.0e-07 59.7 158 29.1
Manes.06G087200 Manihot esculenta HOM05D001658 ORTHO05D001406 7.0e-07 59.7 163 32.5
Oeu051917.1 Olea europaea HOM05D000174 ORTHO05D001526 7.0e-07 59.7 118 29.7
Rhsim05G0047500 Rhododendron simsii HOM05D000174 ORTHO05D001526 7.0e-07 59.7 300 27.0
RhsimUnG0141900 Rhododendron simsii HOM05D000174 ORTHO05D001526 7.0e-07 59.7 300 27.0
TPR.G2047 Trifolium pratense HOM05D001658 ORTHO05D001406 7.0e-07 59.7 326 22.7
Cfa019302 Carpinus fangiana HOM05D001658 ORTHO05D001406 9.2e-07 59.3 175 32.6
Ca_18120_v3 Cicer arietinum L. HOM05D000174 ORTHO05D001526 9.2e-07 59.3 156 32.7
Haze_07685 Corylus avellana HOM05D001658 ORTHO05D001406 9.2e-07 59.3 175 32.6
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 9.2e-07 59.3 222 25.2
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 9.2e-07 59.3 222 25.2
PSO170G5430 Papaver somniferum HOM05D000174 ORTHO05D001526 9.2e-07 59.3 119 32.8
Prupe.2G136600 Prunus persica HOM05D000174 ORTHO05D001526 9.2e-07 59.3 199 26.1
RcHm_v2.0_Chr6g0262421 Rosa chinensis HOM05D000174 ORTHO05D025488 9.2e-07 59.3 266 25.9
TAR625G1147 Trochodendron aralioides HOM05D000174 ORTHO05D001526 9.2e-07 59.3 275 24.7
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 9.2e-07 59.3 283 25.8
HPP92_007426 Vanilla planifolia HOM05D000174 ORTHO05D001526 9.2e-07 59.3 122 27.9
Dinv38789 Davidia involucrata HOM05D000773 ORTHO05D000588 1.2e-06 58.9 156 31.4
FAN06G2490 Fragaria x ananassa HOM05D000174 ORTHO05D001526 1.2e-06 58.9 188 28.7
Lsat_1_v5_gn_3_129301 Lactuca sativa HOM05D000174 ORTHO05D001526 1.2e-06 58.9 134 28.4
Peaxi162Scf00201g00007 Petunia axillaris HOM05D001658 ORTHO05D001406 1.2e-06 58.9 246 26.8
Psat0s219g0120 Pisum sativum HOM05D000174 ORTHO05D001526 1.2e-06 58.9 121 31.4
SHI13573 Sapria himalayana HOM05D000174 ORTHO05D001526 1.2e-06 58.9 118 33.1
PGSC0003DMG400026021 Solanum tuberosum HOM05D000174 ORTHO05D001526 1.2e-06 58.9 118 30.5
Aqoxy3G03584 Aquilegia oxysepala HOM05D001658 ORTHO05D001406 1.6e-06 58.5 146 34.2
DCAR_011049 Daucus carota HOM05D001658 ORTHO05D001406 1.6e-06 58.5 242 27.3
FAN03G0186 Fragaria x ananassa HOM05D000174 ORTHO05D001526 1.6e-06 58.5 173 29.5
Rhsim11G0009300 Rhododendron simsii HOM05D000174 ORTHO05D001526 1.6e-06 58.5 118 30.5
Sed0022118 Sechium edule HOM05D001658 ORTHO05D001406 1.6e-06 58.5 148 31.8
VMungo0331G0774 Vigna mungo HOM05D000174 ORTHO05D001526 1.6e-06 58.5 184 28.3
FAN10G2303 Fragaria x ananassa HOM05D000174 ORTHO05D001526 2.0e-06 58.2 188 28.7
FAN10G2820 Fragaria x ananassa HOM05D000174 ORTHO05D001526 2.0e-06 58.2 188 28.7
MD00G1156100 Malus domestica HOM05D001658 ORTHO05D001406 2.0e-06 58.2 175 30.3
MD09G1062700 Malus domestica HOM05D001658 ORTHO05D001406 2.0e-06 58.2 124 31.5
Nn1g00989 Nelumbo nucifera HOM05D000174 ORTHO05D001526 2.0e-06 58.2 136 33.8
PSO063G0397 Papaver somniferum HOM05D000174 ORTHO05D001526 2.0e-06 58.2 147 32.7
PSO782G2984 Papaver somniferum HOM05D000174 ORTHO05D001526 2.0e-06 58.2 137 32.8
SEGI_17344 Sequoiadendron giganteum HOM05D000174 ORTHO05D001526 2.0e-06 58.2 129 35.7
TWI32G0161 Tripterygium wilfordii HOM05D001658 ORTHO05D001406 2.0e-06 58.2 245 24.9
DCAR_006286 Daucus carota HOM05D000174 ORTHO05D001526 2.7e-06 57.8 242 24.8
FAN01G3149 Fragaria x ananassa HOM05D000174 ORTHO05D001526 2.7e-06 57.8 190 28.9
Nitab4.5_0006258g0020 Nicotiana tabacum HOM05D000174 ORTHO05D004513 2.7e-06 57.8 163 31.3
Oeu009625.1 Olea europaea HOM05D000174 ORTHO05D001526 2.7e-06 57.8 128 28.9
TPR.G4958 Trifolium pratense HOM05D000174 ORTHO05D001526 2.7e-06 57.8 118 30.5
Cfa011145 Carpinus fangiana HOM05D000174 ORTHO05D001526 3.5e-06 57.4 123 30.9
Lsat_1_v5_gn_6_43360 Lactuca sativa HOM05D000174 ORTHO05D001106 3.5e-06 57.4 131 29.0
Lj2C218T7 Lonicera japonica HOM05D000174 ORTHO05D001526 3.5e-06 57.4 134 33.6
Manes.14G084100 Manihot esculenta HOM05D001658 ORTHO05D001406 3.5e-06 57.4 180 30.6
PSO017G6323 Papaver somniferum HOM05D000174 ORTHO05D001526 3.5e-06 57.4 119 31.9
Sabra02G0112000 Salix brachista HOM05D000174 ORTHO05D001526 3.5e-06 57.4 187 28.9
Duzib133G0388 Durio zibethinus HOM05D000174 ORTHO05D001526 4.5e-06 57.0 118 28.8
Migut.L01720 Erythranthe guttata HOM05D000174 ORTHO05D001106 4.5e-06 57.0 127 33.9
Eucgr.I01518 Eucalyptus grandis HOM05D000174 ORTHO05D001526 4.5e-06 57.0 254 26.0
FvH4_5g14270 Fragaria vesca HOM05D001658 ORTHO05D001406 4.5e-06 57.0 197 28.4
FvH4_7g10970 Fragaria vesca HOM05D000174 ORTHO05D001526 4.5e-06 57.0 188 27.7
Lj9P469T55 Lonicera japonica HOM05D001658 ORTHO05D001406 4.5e-06 57.0 306 25.8
Lalb_Chr07g0190341 Lupinus albus HOM05D000174 ORTHO05D001526 4.5e-06 57.0 208 28.4
QL04p036004 Quercus lobata HOM05D000174 ORTHO05D001526 4.5e-06 57.0 118 32.2
Sed0006849 Sechium edule HOM05D001658 ORTHO05D001406 4.5e-06 57.0 306 24.8
Thecc.01G384700 Theobroma cacao HOM05D000174 ORTHO05D001526 4.5e-06 57.0 118 28.8
ATR0064G079 Amborella trichopoda HOM05D001658 ORTHO05D001406 5.9e-06 56.6 147 29.3
CANSAT21G1087 Cannabis sativa HOM05D000174 ORTHO05D001526 5.9e-06 56.6 131 31.3
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 5.9e-06 56.6 227 25.1
SEGI_27594 Sequoiadendron giganteum HOM05D000174 ORTHO05D001526 5.9e-06 56.6 301 23.6
TAR629G0982 Trochodendron aralioides HOM05D000174 ORTHO05D001526 5.9e-06 56.6 118 30.5
CAN.G1080.7 Capsicum annuum HOM05D000174 ORTHO05D001526 7.8e-06 56.2 118 30.5
ClCG04G011920 Citrullus lanatus HOM05D001658 ORTHO05D001406 7.8e-06 56.2 147 32.7
Nitab4.5_0004511g0050 Nicotiana tabacum HOM05D001658 ORTHO05D001406 7.8e-06 56.2 163 30.1
Nitab4.5_0004856g0050 Nicotiana tabacum HOM05D000174 ORTHO05D004513 7.8e-06 56.2 160 30.0
Oeu019599.1 Olea europaea HOM05D000174 ORTHO05D001526 7.8e-06 56.2 309 22.7
RcHm_v2.0_Chr7g0182641 Rosa chinensis HOM05D001658 ORTHO05D001406 7.8e-06 56.2 156 28.8
THA.LOC104803674 Tarenaya hassleriana HOM05D000174 ORTHO05D001526 7.8e-06 56.2 153 27.5
TWI23G0185 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 7.8e-06 56.2 323 22.3


User provided reference genes

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