Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 5.6e-285 983.8 568 100.0
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 9.7e-237 823.5 574 86.6
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 1.3e-233 813.1 568 87.3
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 3.1e-219 765.4 581 80.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.2e-215 753.4 577 82.7
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 7.0e-203 711.1 533 84.1
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 3.5e-202 708.8 569 78.0
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 3.7e-164 582.4 575 67.3
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 5.4e-163 578.6 575 67.1
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 2.6e-157 559.7 575 64.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 6.0e-154 548.5 544 69.3
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 4.9e-140 502.3 466 59.0
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 4.9e-140 502.3 466 59.0
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 2.8e-135 486.5 577 60.8
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 6.2e-135 485.3 577 60.7
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 6.2e-127 458.8 449 67.0
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 5.5e-123 445.7 473 64.3
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 3.3e-120 436.4 448 66.3
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 2.8e-119 433.3 443 63.2
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 2.8e-119 433.3 448 65.0
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 7.7e-117 425.2 434 67.1
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.7e-116 424.1 528 56.4
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 2.9e-116 423.3 444 63.5
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 3.8e-116 422.9 444 64.4
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 5.0e-116 422.5 443 63.0
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 6.5e-116 422.2 444 63.5
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 2.5e-115 420.2 446 64.1
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 7.2e-115 418.7 444 63.5
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 9.4e-115 418.3 443 64.6
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 1.6e-114 417.5 444 63.3
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.6e-114 416.4 444 62.8
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 3.6e-114 416.4 443 64.6
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 3.0e-113 413.3 443 62.3
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.1e-112 411.4 443 63.7
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 1.7e-111 407.5 440 65.2
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 1.7e-111 407.5 444 58.3
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 4.8e-111 406.0 441 62.4
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 4.8e-111 406.0 432 62.7
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 6.3e-111 405.6 498 55.2
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.4e-110 404.4 440 63.4
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 1.8e-110 404.1 440 62.0
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 5.3e-110 402.5 440 63.0
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 3.4e-109 399.8 444 63.3
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.7e-108 397.5 482 59.3
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 3.6e-106 389.8 579 53.4
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 3.3e-104 383.3 554 53.6
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 2.2e-103 380.6 440 59.8
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 4.8e-103 379.4 450 59.3
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 4.8e-103 379.4 439 61.0
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 9.1e-102 375.2 455 58.2
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 7.7e-101 372.1 482 57.7
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 2.3e-97 360.5 389 66.3
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 5.2e-97 359.4 442 58.8
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 8.8e-97 358.6 384 52.9
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 8.8e-97 358.6 384 52.9
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 6.3e-95 352.4 440 56.6
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 1.8e-94 350.9 398 64.3
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 1.8e-94 350.9 439 56.9
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 3.1e-94 350.1 381 65.1
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 3.1e-94 350.1 443 56.4
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 3.1e-94 350.1 440 60.0
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.2e-93 348.2 541 51.2
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 4.5e-93 346.3 440 57.7
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 4.5e-93 346.3 500 54.0
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 7.7e-93 345.5 471 55.8
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 2.9e-92 343.6 439 56.5
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 2.5e-91 340.5 478 52.7
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 5.5e-91 339.3 541 50.8
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 2.7e-90 337.0 479 52.2
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 6.1e-90 335.9 443 54.0
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 1.4e-89 334.7 447 57.3
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 2.3e-89 334.0 489 55.4
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.2e-88 331.6 487 53.0
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 4.4e-88 329.7 405 60.7
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 7.5e-88 328.9 503 52.1
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 9.7e-88 328.6 385 62.6
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.8e-87 327.0 437 55.8
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 1.4e-86 324.7 411 59.6
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 5.3e-86 322.8 449 54.8
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 7.7e-85 318.9 388 58.5
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 2.2e-84 317.4 439 54.9
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 3.8e-84 316.6 450 53.3
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 3.2e-83 313.5 439 53.8
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 3.2e-83 313.5 517 51.6
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.2e-82 311.6 437 54.7
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.0e-81 308.5 495 51.3
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 3.0e-81 307.0 500 50.0
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 4.4e-80 303.1 466 53.6
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 7.5e-80 302.4 572 38.6
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.3e-79 301.6 441 38.8
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 1.7e-79 301.2 507 50.3
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 3.7e-79 300.1 462 52.2
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 6.3e-79 299.3 541 48.1
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 3.1e-78 297.0 468 48.9
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 7.0e-78 295.8 496 50.6
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 1.6e-77 294.7 468 51.3
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 3.0e-73 280.4 481 49.9
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 3.6e-66 256.9 408 51.7
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 4.9e-55 219.9 201 55.2
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 1.0e-52 212.2 402 49.5
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 1.0e-52 212.2 204 52.0
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 2.5e-51 207.6 213 51.6
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 1.2e-48 198.7 220 48.6
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 3.0e-28 131.0 109 58.7
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.8e-20 105.1 111 51.4
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.8e-20 105.1 111 51.4
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 2.7e-13 81.3 149 35.6
Nn8g40494 Nelumbo nucifera HOM05D007251 ORTHO05D009266 3.3e-11 74.3 216 27.8
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.8e-09 68.6 161 28.6
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 2.4e-09 68.2 161 28.6
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 9.0e-09 66.2 143 28.7
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 9.0e-09 66.2 143 28.7
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 1.2e-08 65.9 157 28.7
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 2.0e-08 65.1 149 29.5
BcaB05g25293 Brassica carinata HOM05D000891 ORTHO05D000761 2.6e-08 64.7 159 27.7
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 2.6e-08 64.7 149 29.5
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 2.6e-08 64.7 168 25.0
AagrBONN_evm.TU.Sc2ySwM_228.4327 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-08 64.3 442 18.8
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 3.4e-08 64.3 48 60.4
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 4.5e-08 63.9 149 28.9
Lalb_Chr24g0402511 Lupinus albus HOM05D007251 ORTHO05D009266 4.5e-08 63.9 207 26.1
SMO275G0048 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 4.5e-08 63.9 174 25.9
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 5.8e-08 63.5 161 28.6
Dinv12682 Davidia involucrata HOM05D001779 ORTHO05D001753 5.8e-08 63.5 161 28.0
Sopen01g032720 Solanum pennellii HOM05D000001 ORTHO05D000003 5.8e-08 63.5 125 28.8
Ca_19946_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 7.6e-08 63.2 195 27.2
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 1.0e-07 62.8 149 29.5
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 1.0e-07 62.8 161 26.7
Oeu004393.1 Olea europaea HOM05D000001 ORTHO05D000003 1.0e-07 62.8 130 29.2
Solyc01g081110.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.0e-07 62.8 125 28.8
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.0e-07 62.8 143 28.0
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 1.7e-07 62.0 169 26.0
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 2.2e-07 61.6 160 28.1
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 2.9e-07 61.2 194 24.2
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 3.8e-07 60.8 161 26.7
ECA236G2823 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.8e-07 60.8 164 26.8
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 5.0e-07 60.5 177 22.6
Cc02_g29420 Coffea canephora HOM05D007173 ORTHO05D009151 5.0e-07 60.5 148 27.0
LjContig00222g0015782 Lotus japonicus HOM05D000001 ORTHO05D007291 5.0e-07 60.5 191 22.5
Aa31LG4G11520 Aethionema arabicum HOM05D000001 ORTHO05D000003 6.5e-07 60.1 173 26.6
PGR083G2638 Punica granatum HOM05D008684 ORTHO05D010796 6.5e-07 60.1 186 25.8
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 8.4e-07 59.7 156 26.9
HanXRQChr15g0481881 Helianthus annuus HOM05D000001 ORTHO05D000003 8.4e-07 59.7 151 28.5
CiPaw.08G020100 Carya illinoinensis HOM05D007251 ORTHO05D009266 1.1e-06 59.3 203 23.2
Oeu004357.5 Olea europaea HOM05D000001 ORTHO05D000003 1.1e-06 59.3 130 28.5
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 1.4e-06 58.9 140 25.0
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 1.4e-06 58.9 161 26.1
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 1.4e-06 58.9 162 25.9
Lsat_1_v5_gn_8_89800 Lactuca sativa HOM05D001779 ORTHO05D001753 1.4e-06 58.9 161 26.1
Lj2g0023155 Lotus japonicus HOM05D000001 ORTHO05D007291 1.4e-06 58.9 206 22.8
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 1.4e-06 58.9 140 28.6
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 1.9e-06 58.5 132 25.8
Cpa.g.sc43.5 Carica papaya HOM05D000424 ORTHO05D008586 1.9e-06 58.5 131 27.5
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.9e-06 58.5 135 28.9
Actinidia17972 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.5e-06 58.2 147 28.6
CSS0035408 Camellia sinensis var. sinensis HOM05D007251 ORTHO05D009266 2.5e-06 58.2 203 24.6
CANSAT01G2133 Cannabis sativa HOM05D000424 ORTHO05D008586 2.5e-06 58.2 134 29.1
Lalb_Chr07g0178371 Lupinus albus HOM05D005362 ORTHO05D006895 2.5e-06 58.2 140 25.7
Nitab4.5_0001998g0170 Nicotiana tabacum HOM05D000162 ORTHO05D000090 2.5e-06 58.2 113 31.0
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 2.5e-06 58.2 168 24.4
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 2.5e-06 58.2 146 24.0
THA.LOC104812502 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 2.5e-06 58.2 150 26.0
AagrBONN_evm.TU.Sc2ySwM_228.4557 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-06 57.8 176 27.3
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 3.2e-06 57.8 175 24.0
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.2e-06 57.4 131 25.2
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.2e-06 57.4 110 28.2
Medtr1g009650 Medicago truncatula HOM05D007251 ORTHO05D009266 4.2e-06 57.4 203 22.7
Medtr7g005780 Medicago truncatula HOM05D000424 ORTHO05D008586 4.2e-06 57.4 175 25.7
Psat3g098480 Pisum sativum HOM05D008684 ORTHO05D010796 4.2e-06 57.4 144 30.6
Psat6g032880 Pisum sativum HOM05D007251 ORTHO05D009266 4.2e-06 57.4 203 22.7
QL11p032336 Quercus lobata HOM05D003056 ORTHO05D003422 4.2e-06 57.4 150 24.0
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 4.2e-06 57.4 163 27.0
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 4.2e-06 57.4 117 29.9
BolC6t39374H Brassica oleracea HOM05D002318 ORTHO05D004713 5.5e-06 57.0 172 23.8
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 5.5e-06 57.0 134 26.9
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 5.5e-06 57.0 177 24.9
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 5.5e-06 57.0 140 25.0
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 7.1e-06 56.6 161 25.5
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 7.1e-06 56.6 134 26.1
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 7.1e-06 56.6 144 30.6
Os12g0527900 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D000383 7.1e-06 56.6 183 27.3
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 7.1e-06 56.6 140 24.3
Sed0028237 Sechium edule HOM05D000424 ORTHO05D008586 7.1e-06 56.6 130 28.5
CANSAT80G2247 Cannabis sativa HOM05D000001 ORTHO05D009806 9.3e-06 56.2 196 26.5


User provided reference genes

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