Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 1.4e-35 152.5 85 100.0
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 6.7e-33 143.7 87 94.3
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 9.6e-32 139.8 86 93.0
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 2.0e-29 132.1 87 87.4
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.3e-25 119.4 87 78.2
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.3e-25 119.4 87 78.2
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-25 118.6 88 77.3
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-25 118.6 88 77.3
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 2.3e-25 118.6 88 77.3
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 2.3e-25 118.6 88 77.3
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-24 116.3 88 76.1
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-24 116.3 88 77.3
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 1.1e-24 116.3 88 76.1
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 4.3e-24 114.4 87 79.3
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 7.4e-24 113.6 85 77.6
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 1.3e-23 112.8 88 76.1
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 3.7e-23 111.3 85 76.5
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 3.7e-23 111.3 88 75.0
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 3.7e-23 111.3 85 76.5
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 3.7e-23 111.3 88 75.0
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 6.9e-22 107.1 88 72.7
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 3.2e-19 98.2 84 69.0
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 1.8e-17 92.4 85 65.9
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 7.4e-16 87.0 84 64.3
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.6e-15 85.9 57 75.4
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 6.1e-10 67.4 52 65.4
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.4e-09 66.2 53 60.4
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 2.3e-09 65.5 52 65.4
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 3.9e-09 64.7 52 63.5
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 5.1e-09 64.3 52 63.5
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.1e-09 64.3 52 63.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 5.1e-09 64.3 52 63.5
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 6.7e-09 63.9 53 60.4
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 6.7e-09 63.9 52 61.5
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 6.7e-09 63.9 52 61.5
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.1e-08 63.2 52 63.5
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 1.5e-08 62.8 51 60.8
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 1.5e-08 62.8 48 66.7
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 1.9e-08 62.4 50 64.0
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 55.8
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 57.7
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 59.6
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 55.8
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.7e-07 59.3 50 54.0
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 1.7e-07 59.3 75 46.7
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 4.8e-07 57.8 52 55.8
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 6.3e-07 57.4 53 52.8
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.3e-07 57.4 52 57.7
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.3e-07 57.4 52 57.7
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 8.2e-07 57.0 51 56.9
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 8.2e-07 57.0 52 57.7
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.1e-06 56.6 52 53.8
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.8e-06 55.8 52 53.8
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 1.8e-06 55.8 52 53.8
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 3.1e-06 55.1 50 52.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 3.1e-06 55.1 50 52.0
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 4.1e-06 54.7 53 49.1


User provided reference genes

Program Settings