Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.8e-276 955.3 472 100.0
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 2.6e-267 924.9 472 95.8
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 5.3e-265 917.1 472 94.7
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.2e-256 889.4 475 92.0
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 4.0e-252 874.4 479 90.6
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.7e-248 861.7 479 88.9
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.7e-247 859.0 478 88.5
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 5.0e-247 857.4 477 88.5
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 5.0e-247 857.4 477 88.5
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.1e-245 852.0 477 87.0
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.1e-245 852.0 477 87.0
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 3.0e-244 848.2 483 86.5
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.6e-229 799.3 478 82.2
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 4.9e-226 787.7 424 89.4
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.3e-214 748.0 483 76.4
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.8e-213 745.3 483 76.0
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.1e-212 743.4 467 80.9
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 4.4e-211 738.0 478 74.5
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 7.6e-211 737.3 483 75.2
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.1e-209 733.4 485 74.4
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 6.0e-208 727.6 485 73.0
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 7.8e-208 727.2 485 73.6
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.7e-207 726.1 487 73.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.9e-206 722.6 495 72.7
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 3.3e-206 721.8 501 72.5
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 4.3e-206 721.5 481 73.2
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 5.6e-206 721.1 485 72.8
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 5.6e-206 721.1 482 74.1
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.2e-205 719.9 485 72.6
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.6e-205 719.5 486 73.0
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.4e-204 716.5 469 73.1
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.4e-204 716.5 488 72.5
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 5.2e-204 714.5 472 73.3
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 9.0e-204 713.8 489 72.4
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.2e-203 713.4 488 71.9
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 2.0e-203 712.6 483 72.5
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 2.0e-203 712.6 487 71.9
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.4e-203 711.8 489 71.8
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.4e-203 711.8 488 71.9
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 7.6e-203 710.7 493 72.0
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 9.9e-203 710.3 481 72.6
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 2.2e-202 709.1 499 70.5
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 2.2e-202 709.1 480 72.5
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 2.9e-202 708.8 434 77.0
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.9e-202 708.8 483 72.7
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.9e-202 708.0 486 71.4
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 4.9e-202 708.0 488 71.3
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 6.4e-202 707.6 433 76.9
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 6.4e-202 707.6 432 76.9
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.1e-201 706.8 423 78.0
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.1e-201 706.8 488 71.5
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.4e-201 706.4 488 70.9
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 3.2e-201 705.3 488 70.9
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 3.2e-201 705.3 424 77.1
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 4.2e-201 704.9 492 70.7
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 7.1e-201 704.1 435 79.8
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 9.3e-201 703.7 433 75.1
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 9.3e-201 703.7 491 71.1
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.2e-200 703.4 432 75.9
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.5e-200 701.8 480 71.5
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.6e-200 701.4 485 72.2
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 6.0e-200 701.0 429 75.8
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 7.8e-200 700.7 491 71.1
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.0e-199 700.3 435 75.9
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 1.3e-199 699.9 432 75.5
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.1e-198 696.8 489 71.2
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.5e-198 696.4 487 71.3
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.9e-198 696.0 487 70.4
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.9e-198 696.0 533 66.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.6e-197 693.0 487 70.8
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.6e-197 693.0 484 69.8
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 2.1e-197 692.6 490 70.4
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.1e-197 692.6 427 76.1
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 2.1e-197 692.6 478 71.3
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.8e-197 692.2 424 75.9
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.8e-197 692.2 488 69.5
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 4.8e-197 691.4 444 74.8
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.4e-196 689.9 426 75.6
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.1e-196 688.7 448 73.7
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 9.0e-196 687.2 482 70.5
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 5.8e-195 684.5 522 65.9
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 1.9e-193 679.5 521 65.3
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 9.3e-193 677.2 440 74.5
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.6e-192 676.4 459 71.5
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 3.5e-192 675.2 494 67.6
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.8e-191 672.9 486 67.5
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.7e-191 670.6 403 77.9
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 3.3e-190 668.7 462 70.1
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.9e-188 661.0 472 69.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 9.9e-187 657.1 480 67.5
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 9.9e-187 657.1 404 76.7
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 4.9e-186 654.8 400 75.8
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 6.4e-186 654.4 402 80.6
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 5.5e-185 651.4 374 80.2
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.3e-183 646.0 539 62.2
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.0e-179 632.9 374 77.8
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 5.8e-179 631.3 421 71.0
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.3e-178 630.2 410 73.4
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 2.5e-174 615.9 493 65.5
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 1.6e-173 613.2 459 68.0
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 4.8e-173 611.7 482 65.6
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 3.1e-172 609.0 393 73.0
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 7.9e-168 594.3 433 64.4
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.4e-164 583.6 374 73.5
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.7e-162 576.6 497 56.9
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 2.2e-162 576.2 390 70.3
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.3e-159 566.2 340 76.5
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.2e-157 559.7 492 59.3
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 3.0e-151 539.3 479 57.8
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 2.2e-149 533.1 346 74.6
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 3.6e-144 515.8 293 85.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 3.6e-144 515.8 293 85.0
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 9.7e-142 507.7 481 53.4
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 4.8e-141 505.4 326 73.9
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 2.4e-132 476.5 295 79.7
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 9.8e-126 454.5 260 85.4
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.7e-125 453.8 281 79.4
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.0e-122 444.5 266 83.5
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 9.5e-121 438.0 290 77.2
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.5e-118 430.6 256 77.3
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 9.2e-116 421.4 391 53.5
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 7.3e-113 411.8 348 59.5
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.6e-88 330.9 383 44.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 7.1e-84 315.5 208 71.2
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 3.1e-79 300.1 333 45.3
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.6e-75 287.7 233 68.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.6e-72 277.7 580 32.9
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 6.0e-67 259.2 247 52.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.8e-50 204.5 520 31.7
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 2.9e-45 187.2 110 79.1
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.5e-36 157.5 112 66.1
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 1.1e-33 148.7 95 71.6
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 5.5e-28 129.8 65 92.3
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 5.5e-28 129.8 65 92.3
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.5e-28 129.8 82 68.3
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 2.1e-27 127.9 94 67.0
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 4.7e-27 126.7 65 90.8
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 6.1e-27 126.3 64 92.2
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.0e-26 125.6 104 64.4
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.8e-26 124.8 65 89.2
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.3e-26 124.4 66 87.9
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 4.0e-26 123.6 65 90.8
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 4.0e-26 123.6 65 87.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 5.2e-26 123.2 64 89.1
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 6.8e-26 122.9 65 87.7
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 2.6e-25 120.9 74 82.4
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 2.1e-19 101.3 60 71.7
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 1.7e-16 91.7 53 71.7
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.9e-14 83.2 69 63.8
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 5.2e-10 70.1 84 46.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 6.3e-08 63.2 45 68.9
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.4e-07 62.0 42 66.7


User provided reference genes

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