Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G18210 Arabidopsis lyrata HOM05D002691 ORTHO05D038578 1.4e-44 182.6 90 100.0
Carub.0008s0067 Capsella rubella HOM05D002691 ORTHO05D003304 6.4e-10 67.4 34 88.2
BcaNung06818 Brassica carinata HOM05D002691 ORTHO05D003304 8.4e-10 67.0 34 88.2
A06p44790 Brassica napus HOM05D002691 ORTHO05D003304 8.4e-10 67.0 34 88.2
C07p31410 Brassica napus HOM05D002691 ORTHO05D003304 8.4e-10 67.0 34 88.2
BolC7t43684H Brassica oleracea HOM05D002691 ORTHO05D003304 8.4e-10 67.0 34 88.2
BraA06t27352Z Brassica rapa HOM05D002691 ORTHO05D003304 8.4e-10 67.0 34 88.2
Sp2g12470 Schrenkiella parvula HOM05D002691 ORTHO05D003304 8.4e-10 67.0 34 88.2
AL8G11080 Arabidopsis lyrata HOM05D002691 ORTHO05D003304 1.1e-09 66.6 34 85.3
AT5G47770 Arabidopsis thaliana HOM05D002691 ORTHO05D003304 1.1e-09 66.6 34 85.3
BcaC03g16994 Brassica carinata HOM05D002691 ORTHO05D003304 1.1e-09 66.6 34 85.3
C02p48930 Brassica napus HOM05D002691 ORTHO05D003304 1.1e-09 66.6 34 85.3
BolC2t10987H Brassica oleracea HOM05D002691 ORTHO05D003304 1.1e-09 66.6 34 85.3
Atru.chr8.1594 Acer truncatum HOM05D002691 ORTHO05D003304 1.4e-09 66.2 34 82.4
Cpa.g.sc27.210 Carica papaya HOM05D002691 ORTHO05D003304 1.9e-09 65.9 34 85.3
Gohir.D05G180000 Gossypium hirsutum HOM05D002691 ORTHO05D003304 1.9e-09 65.9 34 82.4
Gorai.009G184900 Gossypium raimondii HOM05D002691 ORTHO05D003304 1.9e-09 65.9 34 82.4
AL7G37540 Arabidopsis lyrata HOM05D002691 ORTHO05D003304 2.4e-09 65.5 34 85.3
CARHR223760 Cardamine hirsuta HOM05D002691 ORTHO05D003304 2.4e-09 65.5 34 85.3
Cc09_g00220 Coffea canephora HOM05D002691 ORTHO05D003304 2.4e-09 65.5 34 79.4
Thhalv10025643m.g Eutrema salsugineum HOM05D002691 ORTHO05D003304 2.4e-09 65.5 34 85.3
COL.COLO4_31950 Corchorus olitorius HOM05D002691 ORTHO05D003304 3.2e-09 65.1 34 82.4
Duzib235G0690 Durio zibethinus HOM05D002691 ORTHO05D003304 3.2e-09 65.1 34 82.4
Sp7g17010 Schrenkiella parvula HOM05D002691 ORTHO05D003304 3.2e-09 65.1 34 82.4
A02p31590 Brassica napus HOM05D002691 ORTHO05D003304 4.2e-09 64.7 34 82.4
BraA02t08160Z Brassica rapa HOM05D002691 ORTHO05D003304 4.2e-09 64.7 34 82.4
CARHR173550 Cardamine hirsuta HOM05D002691 ORTHO05D003304 4.2e-09 64.7 34 82.4
Duzib192G0622 Durio zibethinus HOM05D002691 ORTHO05D003304 4.2e-09 64.7 34 79.4
Thecc.06G242200 Theobroma cacao HOM05D002691 ORTHO05D003304 4.2e-09 64.7 34 79.4
Thhalv10000912m.g Eutrema salsugineum HOM05D002691 ORTHO05D003304 5.4e-09 64.3 34 79.4
Gohir.A05G176600 Gossypium hirsutum HOM05D002691 ORTHO05D003304 5.4e-09 64.3 34 79.4
Peaxi162Scf00006g00522 Petunia axillaris HOM05D002691 ORTHO05D003304 5.4e-09 64.3 34 82.4
CAN.G85.27 Capsicum annuum HOM05D002691 ORTHO05D003304 7.1e-09 63.9 34 79.4
Cfa000020 Carpinus fangiana HOM05D002691 ORTHO05D003304 9.3e-09 63.5 34 76.5
Haze_07041 Corylus avellana HOM05D002691 ORTHO05D003304 9.3e-09 63.5 34 76.5
PGSC0003DMG400029788 Solanum tuberosum HOM05D002691 ORTHO05D003304 9.3e-09 63.5 34 79.4
AT4G17190 Arabidopsis thaliana HOM05D002691 ORTHO05D003304 1.2e-08 63.2 34 82.4
Manes.08G076550 Manihot esculenta HOM05D002691 ORTHO05D003304 1.2e-08 63.2 34 79.4
VMungo0540G1696 Vigna mungo HOM05D002691 ORTHO05D003304 1.2e-08 63.2 34 79.4
Actinidia03650 Actinidia chinensis HOM05D002691 ORTHO05D003304 1.6e-08 62.8 34 76.5
Oeu002783.1 Olea europaea HOM05D002691 ORTHO05D003304 1.6e-08 62.8 40 72.5
Oeu031384.1 Olea europaea HOM05D002691 ORTHO05D003304 1.6e-08 62.8 34 76.5
Oeu044437.1 Olea europaea HOM05D002691 ORTHO05D003304 1.6e-08 62.8 34 82.4
Aa31sc219G40 Aethionema arabicum HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 76.5
arahy.Tifrunner.gnm1.ann1.24MIBH Arachis hypogaea HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 79.4
arahy.Tifrunner.gnm1.ann1.DQ0LIB Arachis hypogaea HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 79.4
CANSAT11G0007 Cannabis sativa HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 76.5
Carub.0007s2422 Capsella rubella HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 82.4
Ca_00772_v3 Cicer arietinum L. HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 79.4
Medtr2g027300 Medicago truncatula HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 79.4
Phvul.006G136300 Phaseolus vulgaris HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 79.4
Psat1g172160 Pisum sativum HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 79.4
Potri.006G003400 Populus trichocarpa HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 79.4
Hund23082 Selenicereus undatus HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 76.5
THA.LOC104812789 Tarenaya hassleriana HOM05D002691 ORTHO05D003304 2.1e-08 62.4 34 73.5
Lalb_Chr15g0088311 Lupinus albus HOM05D002691 ORTHO05D003304 2.7e-08 62.0 34 76.5
QL05p066721 Quercus lobata HOM05D002691 ORTHO05D003304 2.7e-08 62.0 34 76.5
SGA_v2.0_scaffold7G03678 Striga asiatica HOM05D002691 ORTHO05D003304 2.7e-08 62.0 34 79.4
MELO3C024967.2 Cucumis melo HOM05D002691 ORTHO05D003304 3.5e-08 61.6 34 76.5
CsaV3_7G023860 Cucumis sativus L. HOM05D002691 ORTHO05D003304 3.5e-08 61.6 34 76.5
Nitab4.5_0006469g0010 Nicotiana tabacum HOM05D002691 ORTHO05D003304 3.5e-08 61.6 34 76.5
Hund23087 Selenicereus undatus HOM05D002691 ORTHO05D003304 3.5e-08 61.6 34 73.5
TWI38G2248 Tripterygium wilfordii HOM05D002691 ORTHO05D003304 3.5e-08 61.6 34 76.5
HPP92_023137 Vanilla planifolia HOM05D002691 ORTHO05D003304 3.5e-08 61.6 34 79.4
CANSAT56G2557 Cannabis sativa HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 76.5
Duzib170G0390 Durio zibethinus HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 79.4
Gorai.002G102700 Gossypium raimondii HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 79.4
Solyc10g005820.3 Solanum lycopersicum HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 76.5
Sopen10g001780 Solanum pennellii HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 76.5
PGSC0003DMG400008690 Solanum tuberosum HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 76.5
TPR.G17552 Trifolium pratense HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 79.4
HPP92_023136 Vanilla planifolia HOM05D002691 ORTHO05D003304 4.6e-08 61.2 34 76.5
ClCG09G021520 Citrullus lanatus HOM05D002691 ORTHO05D003304 6.0e-08 60.8 34 76.5
Sc03g0011550 Simmondsia chinensis HOM05D002691 ORTHO05D003304 6.0e-08 60.8 34 76.5
CSS0014758 Camellia sinensis var. sinensis HOM05D002691 ORTHO05D003304 7.8e-08 60.5 34 73.5
CiPaw.09G110400 Carya illinoinensis HOM05D002691 ORTHO05D003304 7.8e-08 60.5 34 70.6
Haze_09862 Corylus avellana HOM05D002691 ORTHO05D003304 7.8e-08 60.5 34 70.6
Glyma.15G121400 Glycine max HOM05D002691 ORTHO05D003304 7.8e-08 60.5 34 76.5
Gohir.A01G093600 Gossypium hirsutum HOM05D002691 ORTHO05D003304 7.8e-08 60.5 34 79.4
Nitab4.5_0002216g0020 Nicotiana tabacum HOM05D002691 ORTHO05D003304 7.8e-08 60.5 34 73.5
TAR624G0565 Trochodendron aralioides HOM05D002691 ORTHO05D003304 7.8e-08 60.5 34 70.6
TAR629G2924 Trochodendron aralioides HOM05D002691 ORTHO05D003304 7.8e-08 60.5 51 52.9
CAN.G492.52 Capsicum annuum HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 73.5
Cc05_g15270 Coffea canephora HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 70.6
FvH4_3g42290 Fragaria vesca HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 76.5
FAN11G2387 Fragaria x ananassa HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 76.5
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 76.5
Lj6g0011061 Lotus japonicus HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 73.5
Lalb_Chr18g0057421 Lupinus albus HOM05D002691 ORTHO05D003304 1.0e-07 60.1 75 38.7
Nitab4.5_0003328g0080 Nicotiana tabacum HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 73.5
Nitab4.5_0005478g0020 Nicotiana tabacum HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 73.5
PSO210G3586 Papaver somniferum HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 70.6
Prupe.4G002700 Prunus persica HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 70.6
Sabra06G0003100 Salix brachista HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 76.5
TWI39G0844 Tripterygium wilfordii HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 70.6
Zm00001eb155590 Zea mays HOM05D002691 ORTHO05D003304 1.0e-07 60.1 34 76.5
MSTRG.7119 Avicennia marina HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 76.5
Cfa021887 Carpinus fangiana HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 70.6
CiPaw.11G206700 Carya illinoinensis HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 70.6
CiPaw.12G140500 Carya illinoinensis HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 70.6
Migut.B01300 Erythranthe guttata HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 76.5
Migut.K01152 Erythranthe guttata HOM05D001718 ORTHO05D007949 1.3e-07 59.7 34 76.5
Migut.K01246 Erythranthe guttata HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 76.5
Migut.K01252 Erythranthe guttata HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 76.5
Gohir.D01G078100 Gossypium hirsutum HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 76.5
PGR042G2996 Punica granatum HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 73.5
Sed0017767 Sechium edule HOM05D002691 ORTHO05D003304 1.3e-07 59.7 34 73.5
Ah.04g161090 Amaranthus hybridus HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 70.6
EL10Ac4g07539 Beta vulgaris HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 73.5
CiPaw.10G083100 Carya illinoinensis HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 70.6
FAN21G2170 Fragaria x ananassa HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 70.6
Lalb_Chr20g0119601 Lupinus albus HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 73.5
Hund23086 Selenicereus undatus HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 70.6
Solyc12g015860.2 Solanum lycopersicum HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 73.5
Sopen12g007740 Solanum pennellii HOM05D002691 ORTHO05D003304 1.7e-07 59.3 34 73.5
Cc02_g29520 Coffea canephora HOM05D002691 ORTHO05D038578 2.3e-07 58.9 36 66.7
Haze_07039 Corylus avellana HOM05D002691 ORTHO05D003304 2.3e-07 58.9 34 70.6
FAN25G1507 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.3e-07 58.9 34 73.5
Hma1.2p1_0193F.1_g083900 Hydrangea macrophylla HOM05D002691 ORTHO05D003304 2.3e-07 58.9 35 68.6
MD05G1362500 Malus domestica HOM05D002691 ORTHO05D003304 2.3e-07 58.9 34 70.6
MD10G1340100 Malus domestica HOM05D002691 ORTHO05D003304 2.3e-07 58.9 34 70.6
Prupe.6G028100 Prunus persica HOM05D002691 ORTHO05D003304 2.3e-07 58.9 34 70.6
RcHm_v2.0_Chr5g0000321 Rosa chinensis HOM05D002691 ORTHO05D003304 2.3e-07 58.9 34 73.5
Dinv04391 Davidia involucrata HOM05D002176 ORTHO05D002598 3.0e-07 58.5 34 70.6
FvH4_3g00240 Fragaria vesca HOM05D002691 ORTHO05D003304 3.0e-07 58.5 34 70.6
FAN14G3647 Fragaria x ananassa HOM05D002691 ORTHO05D003304 3.0e-07 58.5 34 70.6
FAN21G1017 Fragaria x ananassa HOM05D002691 ORTHO05D003304 3.0e-07 58.5 34 70.6
Manes.03G143700 Manihot esculenta HOM05D002691 ORTHO05D003304 3.9e-07 58.2 34 70.6
Manes.09G084500 Manihot esculenta HOM05D002691 ORTHO05D003304 3.9e-07 58.2 34 73.5
PSO210G0730 Papaver somniferum HOM05D002691 ORTHO05D003304 3.9e-07 58.2 34 67.6
PSO675G4903 Papaver somniferum HOM05D002691 ORTHO05D003304 3.9e-07 58.2 34 73.5
TAR627G1201 Trochodendron aralioides HOM05D002691 ORTHO05D003304 3.9e-07 58.2 34 67.6
unitig_32.g11064 Utricularia gibba HOM05D002691 ORTHO05D003304 3.9e-07 58.2 34 73.5
CDE10G1048 Ceratophyllum demersum HOM05D002691 ORTHO05D003304 5.1e-07 57.8 34 67.6
Ciclev10008832m.g Citrus clementina HOM05D002691 ORTHO05D003304 5.1e-07 57.8 34 73.5
COL.COLO4_07739 Corchorus olitorius HOM05D002691 ORTHO05D003304 5.1e-07 57.8 34 70.6
FvH4_6g06340 Fragaria vesca HOM05D002691 ORTHO05D003304 5.1e-07 57.8 34 70.6
GSVIVG01014738001 Vitis vinifera HOM05D002691 ORTHO05D003304 5.1e-07 57.8 34 73.5
Aqoxy6G01227 Aquilegia oxysepala HOM05D002691 ORTHO05D003304 6.6e-07 57.4 34 70.6
CSS0023388 Camellia sinensis var. sinensis HOM05D002691 ORTHO05D003304 6.6e-07 57.4 34 70.6
CSS0042554 Camellia sinensis var. sinensis HOM05D002691 ORTHO05D003304 6.6e-07 57.4 34 70.6
Lj8A180G90 Lonicera japonica HOM05D002691 ORTHO05D003304 6.6e-07 57.4 34 70.6
SGA_v2.0_scaffold186G40136 Striga asiatica HOM05D002691 ORTHO05D003304 6.6e-07 57.4 36 69.4
CsaV3_6G002810 Cucumis sativus L. HOM05D002691 ORTHO05D003304 8.7e-07 57.0 34 67.6
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 8.7e-07 57.0 34 67.6
Duzib213G0749 Durio zibethinus HOM05D002691 ORTHO05D003304 8.7e-07 57.0 34 73.5
HanXRQChr08g0232671 Helianthus annuus HOM05D002691 ORTHO05D003304 8.7e-07 57.0 34 73.5
RcHm_v2.0_Chr5g0075621 Rosa chinensis HOM05D002691 ORTHO05D003304 8.7e-07 57.0 34 64.7
vmacro09624 Vaccinium macrocarpon HOM05D002691 ORTHO05D003304 8.7e-07 57.0 32 75.0
CDE10G0079 Ceratophyllum demersum HOM05D002691 ORTHO05D003304 1.1e-06 56.6 34 64.7
PSO541G0817 Papaver somniferum HOM05D002691 ORTHO05D003304 1.1e-06 56.6 34 70.6
Thecc.07G008100 Theobroma cacao HOM05D002691 ORTHO05D003304 1.1e-06 56.6 34 70.6
TWI38G1555 Tripterygium wilfordii HOM05D002691 ORTHO05D003304 1.1e-06 56.6 34 64.7
Zm00001eb361070 Zea mays HOM05D002691 ORTHO05D003304 1.1e-06 56.6 34 73.5
Lj1A894T48 Lonicera japonica HOM05D002691 ORTHO05D003304 1.5e-06 56.2 34 67.6
MSTRG.14502 Avicennia marina HOM05D002691 ORTHO05D003304 1.9e-06 55.8 34 64.7
MBI15_g38531_MAGBIO Magnolia biondii HOM05D002691 ORTHO05D003304 1.9e-06 55.8 34 67.6
MD03G1034900 Malus domestica HOM05D002691 ORTHO05D003304 1.9e-06 55.8 34 64.7
Solyc10g005840.4 Solanum lycopersicum HOM05D002691 ORTHO05D003304 1.9e-06 55.8 34 67.6
Sopen10g001800 Solanum pennellii HOM05D002691 ORTHO05D003304 1.9e-06 55.8 34 67.6
Glyma.09G015600 Glycine max HOM05D002691 ORTHO05D003304 2.5e-06 55.5 34 70.6
Os01g0703400 Oryza sativa ssp. japonica HOM05D002691 ORTHO05D003304 2.5e-06 55.5 34 70.6
Migut.H01742 Erythranthe guttata HOM05D002691 ORTHO05D003304 3.3e-06 55.1 34 70.6
Eucgr.E03835 Eucalyptus grandis HOM05D002691 ORTHO05D003304 3.3e-06 55.1 34 67.6
Eucgr.E03836 Eucalyptus grandis HOM05D002691 ORTHO05D003304 3.3e-06 55.1 34 67.6
Rhsim04G0010600 Rhododendron simsii HOM05D002691 ORTHO05D003304 3.3e-06 55.1 39 59.0
Zm00001eb342550 Zea mays HOM05D002691 ORTHO05D003304 3.3e-06 55.1 34 67.6
MD11G1036800 Malus domestica HOM05D002691 ORTHO05D003304 4.3e-06 54.7 34 64.7
Nn1g07747 Nelumbo nucifera HOM05D002691 ORTHO05D003304 4.3e-06 54.7 32 68.8
PGSC0003DMG400014369 Solanum tuberosum HOM05D002691 ORTHO05D003304 4.3e-06 54.7 34 67.6
ECA246G4737 Erigeron canadensis HOM05D002691 ORTHO05D003304 5.6e-06 54.3 34 70.6
Lsat_1_v5_gn_7_114941 Lactuca sativa HOM05D002691 ORTHO05D003304 5.6e-06 54.3 34 70.6
ATR0751G035 Amborella trichopoda HOM05D002691 ORTHO05D003304 7.3e-06 53.9 34 73.5
MELO3C024982.2 Cucumis melo HOM05D002691 ORTHO05D003304 9.6e-06 53.5 34 64.7
HanXRQChr05g0160311 Helianthus annuus HOM05D002691 ORTHO05D003304 9.6e-06 53.5 34 67.6
Lsat_1_v5_gn_5_2060 Lactuca sativa HOM05D002691 ORTHO05D003304 9.6e-06 53.5 34 67.6
SalBow8G3570 Salvia bowleyana HOM05D002691 ORTHO05D003304 9.6e-06 53.5 34 67.6
SalBow8G5166 Salvia bowleyana HOM05D002691 ORTHO05D003304 9.6e-06 53.5 34 67.6


User provided reference genes

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