Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 1.1e-37 159.5 82 100.0
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 2.2e-33 145.2 82 90.2
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 4.9e-33 144.1 82 90.2
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 2.4e-32 141.7 82 89.0
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 6.0e-31 137.1 82 86.6
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 3.0e-30 134.8 82 86.6
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 1.1e-29 132.9 82 85.4
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 1.1e-29 132.9 82 82.9
BolC9t53314H Brassica oleracea HOM05D009946 ORTHO05D004401 1.5e-29 132.5 82 85.4
BcaC03g17517 Brassica carinata HOM05D009946 ORTHO05D004401 6.2e-28 127.1 82 84.1
BolC2t11540H Brassica oleracea HOM05D009946 ORTHO05D004401 6.2e-28 127.1 82 84.1
BcaC04g23875 Brassica carinata HOM05D009946 ORTHO05D004401 1.7e-25 119.0 75 82.7
BcaB04g19463 Brassica carinata HOM05D009946 ORTHO05D004401 4.9e-25 117.5 70 85.7
C07p37510 Brassica napus HOM05D009946 ORTHO05D004401 8.4e-25 116.7 82 76.8
BolC7t44264H Brassica oleracea HOM05D009946 ORTHO05D004401 8.4e-25 116.7 82 76.8
BraA09t36003Z Brassica rapa HOM05D009946 ORTHO05D004401 2.4e-24 115.2 82 75.6
C02p54790 Brassica napus HOM05D009946 ORTHO05D004401 1.6e-23 112.5 70 82.9
A02p35950 Brassica napus HOM05D009946 ORTHO05D004401 1.3e-22 109.4 70 82.9
BraA02t08594Z Brassica rapa HOM05D009946 ORTHO05D004401 1.3e-22 109.4 70 82.9
A06p40520 Brassica napus HOM05D009946 ORTHO05D004401 2.5e-21 105.1 82 69.5
BraA06t26971Z Brassica rapa HOM05D009946 ORTHO05D004401 2.5e-21 105.1 82 69.5
BcaC06g33736 Brassica carinata HOM05D009946 ORTHO05D004401 1.1e-19 99.8 70 75.7
Aa31LG2G4620 Aethionema arabicum HOM05D009946 ORTHO05D004401 1.3e-17 92.8 81 64.2
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 1.0e-14 83.2 74 62.2
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 6.2e-12 73.9 91 48.4
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 1.4e-11 72.8 94 47.9
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 5.3e-11 70.9 90 48.9
Sp7g02070 Schrenkiella parvula HOM05D009946 ORTHO05D004401 3.4e-10 68.2 75 54.7
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 3.4e-10 68.2 91 45.1
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 5.8e-10 67.4 91 47.3
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 6.5e-09 63.9 93 46.2
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 8.4e-09 63.5 103 39.8
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.1e-08 63.2 94 42.6
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.1e-08 63.2 83 44.6
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 1.9e-08 62.4 104 39.4
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.2e-08 61.2 94 41.5
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 4.2e-08 61.2 86 41.9
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 5.5e-08 60.8 90 40.0
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 7.1e-08 60.5 81 38.3
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 7.1e-08 60.5 83 43.4
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 7.1e-08 60.5 83 43.4
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.6e-07 59.3 88 45.5
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.6e-07 59.3 49 59.2
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 1.6e-07 59.3 93 43.0
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 2.1e-07 58.9 81 46.9
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 2.7e-07 58.5 74 44.6
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.7e-07 58.5 91 42.9
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 3.5e-07 58.2 81 40.7
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 3.5e-07 58.2 94 40.4
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 3.5e-07 58.2 94 40.4
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 4.6e-07 57.8 91 39.6
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 4.6e-07 57.8 84 41.7
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 6.1e-07 57.4 81 37.0
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 1.0e-06 56.6 92 39.1
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.3e-06 56.2 89 40.4
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.3e-06 56.2 77 46.8
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.3e-06 56.2 82 45.1
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.8e-06 55.8 85 42.4
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.3e-06 55.5 90 42.2
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 2.3e-06 55.5 87 44.8
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.3e-06 55.5 85 44.7
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 3.0e-06 55.1 94 43.6
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.9e-06 54.7 90 38.9
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.9e-06 54.7 106 36.8
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.9e-06 54.7 94 34.0
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 6.7e-06 53.9 86 39.5
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 8.7e-06 53.5 88 40.9
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 8.7e-06 53.5 93 39.8


User provided reference genes

Program Settings